BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG965942.1|CG965942 MBEMN76TR mth2 Medicago truncatula g... 64 1e-008
gb|CA916878.1|CA916878 EST641025 GPOD Medicago truncatula c... 64 1e-008
gb|AJ499929.1|AJ499929 AJ499929 MTGIM Medicago truncatula c... 64 1e-008
gb|AJ499981.1|AJ499981 AJ499981 MTGIM Medicago truncatula c... 64 1e-008
gb|CG971983.1|CG971983 MBECP75TR mth2 Medicago truncatula g... 62 6e-008
gb|AJ548023.1|AJ548023 AJ548023 MTAPHEU Medicago truncatula... 54 1e-005
gb|CG971174.1|CG971174 MBEHL83TR mth2 Medicago truncatula g... 50 2e-004
gb|AW125998.2|AW125998 N100194e rootphos(-) Medicago trunca... 50 2e-004
gb|AW126088.2|AW126088 N100285e rootphos(-) Medicago trunca... 50 2e-004
gb|BF632690.1|BF632690 NF039A10DT1F1070 Drought Medicago tr... 50 2e-004
gb|AW687116.2|AW687116 NF006B08RT1F1064 Developing root Med... 50 2e-004
gb|BI307957.1|BI307957 EST529367 GPOD Medicago truncatula c... 50 2e-004
gb|BI310056.1|BI310056 EST5311806 GESD Medicago truncatula ... 50 2e-004
gb|CA918208.1|CA918208 EST642355 GPOD Medicago truncatula c... 50 2e-004
gb|CB892036.1|CB892036 EST649005 KV3 Medicago truncatula cD... 50 2e-004
gb|CB892864.1|CB892864 EST645656 HOGA Medicago truncatula c... 50 2e-004
gb|AJ500306.1|AJ500306 AJ500306 MTGIM Medicago truncatula c... 50 2e-004
gb|AJ499513.1|AJ499513 AJ499513 MTGIM Medicago truncatula c... 50 2e-004
gb|AW573694.1|AW573694 EST316285 GVN Medicago truncatula cD... 48 8e-004
gb|AW573878.1|AW573878 EST316469 GVN Medicago truncatula cD... 48 8e-004
gb|AW685023.1|AW685023 NF024D02NR1F1000 Nodulated root Medi... 48 8e-004
gb|AW126351.2|AW126351 N100458e rootphos(-) Medicago trunca... 48 8e-004
gb|AW773879.1|AW773879 EST332865 KV3 Medicago truncatula cD... 48 8e-004
gb|BE203416.1|BE203416 EST403438 KV1 Medicago truncatula cD... 48 8e-004
gb|AL373865.1|AL373865 MtBB03C08F1 MtBB Medicago truncatula... 48 8e-004
gb|BE997844.1|BE997844 EST429567 GVSN Medicago truncatula c... 48 8e-004
gb|BE998469.1|BE998469 EST430192 GVSN Medicago truncatula c... 48 8e-004
gb|BE999871.1|BE999871 EST431594 GVSN Medicago truncatula c... 48 8e-004
gb|BG580357.1|BG580357 EST482082 GVN Medicago truncatula cD... 48 8e-004
gb|BG580608.1|BG580608 EST482335 GVN Medicago truncatula cD... 48 8e-004
gb|BG580619.1|BG580619 EST482346 GVN Medicago truncatula cD... 48 8e-004
gb|BG580888.1|BG580888 EST482617 GVN Medicago truncatula cD... 48 8e-004
gb|BG581612.1|BG581612 EST483347 GVN Medicago truncatula cD... 48 8e-004
gb|BG581937.1|BG581937 EST483673 GVN Medicago truncatula cD... 48 8e-004
gb|BG582007.1|BG582007 EST483744 GVN Medicago truncatula cD... 48 8e-004
gb|BG583279.1|BG583279 EST485030 GVN Medicago truncatula cD... 48 8e-004
gb|BG583290.1|BG583290 EST485041 GVN Medicago truncatula cD... 48 8e-004
gb|BG583777.1|BG583777 EST485532 GVN Medicago truncatula cD... 48 8e-004
gb|BG648000.1|BG648000 EST509619 HOGA Medicago truncatula c... 48 8e-004
gb|BQ146384.1|BQ146384 NF069E05FL1F1039 Developing flower M... 48 8e-004
gb|CA917502.1|CA917502 EST641649 GPOD Medicago truncatula c... 48 8e-004
gb|CA918151.1|CA918151 EST642298 GPOD Medicago truncatula c... 48 8e-004
gb|CB892613.1|CB892613 EST645405 HOGA Medicago truncatula c... 48 8e-004
gb|CB893069.1|CB893069 EST645861 HOGA Medicago truncatula c... 48 8e-004
gb|CB893506.1|CB893506 EST646298 HOGA Medicago truncatula c... 48 8e-004
gb|AJ500394.1|AJ500394 AJ500394 MTGIM Medicago truncatula c... 48 8e-004
gb|AJ500895.1|AJ500895 AJ500895 MTGIM Medicago truncatula c... 48 8e-004
gb|AJ499445.1|AJ499445 AJ499445 MTGIM Medicago truncatula c... 48 8e-004
gb|CX529156.1|CX529156 s13dNF42F03MJ027_244370 Methyl Jasmo... 48 8e-004
emb|AJ131943.1|MTR131943 Medicago truncatula mRNA for sucro... 48 8e-004
emb|AJ131964.1|MTR131964 Medicago truncatula sucS1 gene, ex... 48 8e-004
gb|BV165723.1| SUSY-1 PCR fragment of the molecular marker,... 48 8e-004
gb|BV165724.1| SUSY-2 PCR fragment of the molecular marker,... 48 8e-004
gb|BV165725.1| SUSY-3 PCR fragment of the molecular marker,... 48 8e-004
gb|AC124967.25| Medicago truncatula clone mth2-13h21, WORKI... 48 8e-004
gb|BQ137165.1|BQ137165 NF070G09ST1F1071 Developing stem Med... 44 0.013
gb|AW257512.1|AW257512 EST305649 KV2 Medicago truncatula cD... 40 0.20
gb|AW560396.1|AW560396 EST315444 DSIR Medicago truncatula c... 40 0.20
gb|AW980699.1|AW980699 EST391852 GVN Medicago truncatula cD... 40 0.20
gb|AL373161.1|AL373161 MtBA56A09F1 MtBA Medicago truncatula... 40 0.20
gb|BI272122.1|BI272122 NF019G07FL1F1055 Developing flower M... 40 0.20
>gb|CG965942.1|CG965942 MBEMN76TR mth2 Medicago truncatula genomic clone 3M8, DNA sequence
Length = 957
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||||||||| || ||||| || ||||| ||||||||||| ||||||||||||||
Sbjct: 864 gttgtccatggcattgatgtttttgatcccaagttcaatattgtctctcctggagc 809
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 183 gaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataac 241
|||||||||||||| || |||||||||||||||| || ||||| || || ||||||||
Sbjct: 403 gaccggtcaaagcctataatcttctccatggcaaggcttgacagagttaaaaacataac 345
>gb|CA916878.1|CA916878 EST641025 GPOD Medicago truncatula cDNA clone GPOD-34O21, mRNA
sequence
Length = 727
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||||||||| || ||||| || ||||| ||||||||||| ||||||||||||||
Sbjct: 144 gttgtccatggcattgatgtttttgatcccaagttcaatattgtctctcctggagc 199
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 183 gaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataac 241
|||||||||||||| || |||||||||||||||| || ||||| || || ||||||||
Sbjct: 321 gaccggtcaaagcctataatcttctccatggcaaggcttgacagagttaaaaacataac 379
>gb|AJ499929.1|AJ499929 AJ499929 MTGIM Medicago truncatula cDNA clone mtgmacc120010d02,
mRNA sequence
Length = 668
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||||||||| || ||||| || ||||| ||||||||||| ||||||||||||||
Sbjct: 158 gttgtccatggcattgatgtttttgatcccaagttcaatattgtctctcctggagc 103
>gb|AJ499981.1|AJ499981 AJ499981 MTGIM Medicago truncatula cDNA clone mtgmacc120011a11,
mRNA sequence
Length = 575
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||||||||| || ||||| || ||||| ||||||||||| ||||||||||||||
Sbjct: 158 gttgtccatggcattgatgtttttgatcccaagttcaatattgtctctcctggagc 103
>gb|CG971983.1|CG971983 MBECP75TR mth2 Medicago truncatula genomic clone 27N6, DNA sequence
Length = 676
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 6 gttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagctgac 65
||||| || ||||| ||||| || ||||| ||||||||||| |||||||| ||||| |||
Sbjct: 379 gttgttcacgggattgatgtttttgatcctaagttcaatattgtctctcccggagcagac 438
Query: 66 atgtccatata 76
|||| ||||||
Sbjct: 439 atgtgcatata 449
>gb|AJ548023.1|AJ548023 AJ548023 MTAPHEU Medicago truncatula cDNA clone mtaehac110002d02,
mRNA sequence
Length = 558
Score = 54.0 bits (27), Expect = 1e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 183 gaccggtcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacataac 241
|||||||||||||| || |||||||||||||||| || ||||| || || ||||||||
Sbjct: 554 gaccggtcaaagcctataatcttctccatggcaaggcttgacagagttaaaaacataac 496
>gb|CG971174.1|CG971174 MBEHL83TR mth2 Medicago truncatula genomic clone 56N22, DNA
sequence
Length = 726
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 276 ctgagggagctggtaaaccttgtcgtcgt 304
||||||||||| |||||||||||||||||
Sbjct: 227 ctgagggagctagtaaaccttgtcgtcgt 199
>gb|AW125998.2|AW125998 N100194e rootphos(-) Medicago truncatula cDNA clone MHRP-3B7, mRNA
sequence
Length = 551
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgt 304
||||||||||| |||||||||||||||||
Sbjct: 71 ctgagggagctagtaaaccttgtcgtcgt 99
>gb|AW126088.2|AW126088 N100285e rootphos(-) Medicago truncatula cDNA clone MHRP-4B7, mRNA
sequence
Length = 439
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgt 304
||||||||||| |||||||||||||||||
Sbjct: 71 ctgagggagctagtaaaccttgtcgtcgt 99
>gb|BF632690.1|BF632690 NF039A10DT1F1070 Drought Medicago truncatula cDNA clone NF039A10DT
5', mRNA sequence
Length = 504
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgt 304
||||||||||| |||||||||||||||||
Sbjct: 353 ctgagggagctagtaaaccttgtcgtcgt 381
Score = 50.1 bits (25), Expect = 2e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||| || || |||||||| || |||||||||||||| || ||||| || ||||
Sbjct: 78 accgtgttgttcacggtatcgatgtttttgatccaaagttcaacattgtctcacccggag 137
Query: 61 ctgacatgtccatatactttccacataccgaga 93
|||| ||| ||| ||||| ||| | |||||||
Sbjct: 138 ctgatatgagcatctacttcccatacaccgaga 170
>gb|AW687116.2|AW687116 NF006B08RT1F1064 Developing root Medicago truncatula cDNA clone
NF006B08RT 5', mRNA sequence
Length = 562
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgt 304
||||||||||| |||||||||||||||||
Sbjct: 283 ctgagggagctagtaaaccttgtcgtcgt 311
>gb|BI307957.1|BI307957 EST529367 GPOD Medicago truncatula cDNA clone pGPOD-1O20 5' end,
mRNA sequence
Length = 787
Score = 50.1 bits (25), Expect = 2e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||| || || |||||||| || |||||||||||||| || ||||| || ||||
Sbjct: 295 accgtgttgttcacggtatcgatgtttttgatccaaagttcaacattgtctcacccggag 354
Query: 61 ctgacatgtccatatactttccacataccgaga 93
|||| ||| ||| ||||| ||| | |||||||
Sbjct: 355 ctgatatgagcatctacttcccatacaccgaga 387
>gb|BI310056.1|BI310056 EST5311806 GESD Medicago truncatula cDNA clone pGESD4P2 5' end,
mRNA sequence
Length = 585
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgt 304
||||||||||| |||||||||||||||||
Sbjct: 157 ctgagggagctagtaaaccttgtcgtcgt 185
>gb|CA918208.1|CA918208 EST642355 GPOD Medicago truncatula cDNA clone GPOD-38H19, mRNA
sequence
Length = 777
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgt 304
||||||||||| |||||||||||||||||
Sbjct: 108 ctgagggagctagtaaaccttgtcgtcgt 136
>gb|CB892036.1|CB892036 EST649005 KV3 Medicago truncatula cDNA clone KV3-53A3, mRNA
sequence
Length = 338
Score = 50.1 bits (25), Expect = 2e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||| || || |||||||| || |||||||||||||| || ||||| || ||||
Sbjct: 225 accgtgttgttcacggtatcgatgtttttgatccaaagttcaacattgtctcacccggag 284
Query: 61 ctgacatgtccatatactttccacataccgaga 93
|||| ||| ||| ||||| ||| | |||||||
Sbjct: 285 ctgatatgagcatctacttcccatacaccgaga 317
>gb|CB892864.1|CB892864 EST645656 HOGA Medicago truncatula cDNA clone HOGA-26C1, mRNA
sequence
Length = 875
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 276 ctgagggagctggtaaaccttgtcgtcgt 304
||||||||||| |||||||||||||||||
Sbjct: 66 ctgagggagctagtaaaccttgtcgtcgt 94
>gb|AJ500306.1|AJ500306 AJ500306 MTGIM Medicago truncatula cDNA clone mtgmacc120015a02,
mRNA sequence
Length = 361
Score = 50.1 bits (25), Expect = 2e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||| || || |||||||| || |||||||||||||| || ||||| || ||||
Sbjct: 83 accgtgttgttcacggtatcgatgtttttgatccaaagttcaacattgtctcacccggag 142
Query: 61 ctgacatgtccatatactttccacataccgaga 93
|||| ||| ||| ||||| ||| | |||||||
Sbjct: 143 ctgatatgagcatctacttcccatacaccgaga 175
>gb|AJ499513.1|AJ499513 AJ499513 MTGIM Medicago truncatula cDNA clone mtgmacc120005b08,
mRNA sequence
Length = 361
Score = 50.1 bits (25), Expect = 2e-004
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||| || || |||||||| || |||||||||||||| || ||||| || ||||
Sbjct: 83 accgtgttgttcacggtatcgatgtttttgatccaaagttcaacattgtctcacccggag 142
Query: 61 ctgacatgtccatatactttccacataccgaga 93
|||| ||| ||| ||||| ||| | |||||||
Sbjct: 143 ctgatatgagcatctacttcccatacaccgaga 175
>gb|AW573694.1|AW573694 EST316285 GVN Medicago truncatula cDNA clone pGVN-47P4, mRNA
sequence
Length = 611
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 123 gatgtctttgatccaaagttcaacattgtatctccaggagctga 166
>gb|AW573878.1|AW573878 EST316469 GVN Medicago truncatula cDNA clone pGVN-49I22, mRNA
sequence
Length = 524
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 256 gatgtctttgatccaaagttcaacattgtatctccaggagctga 299
>gb|AW685023.1|AW685023 NF024D02NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF024D02NR 5', mRNA sequence
Length = 397
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 41 gatgtctttgatccaaagttcaacattgtatctccaggagctga 84
>gb|AW126351.2|AW126351 N100458e rootphos(-) Medicago truncatula cDNA clone MHRP-6B9, mRNA
sequence
Length = 463
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 180 gatgtctttgatccaaagttcaacattgtatctccaggagctga 223
>gb|AW773879.1|AW773879 EST332865 KV3 Medicago truncatula cDNA clone pKV3-16O12, mRNA
sequence
Length = 572
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 123 gatgtctttgatccaaagttcaacattgtatctccaggagctga 166
>gb|BE203416.1|BE203416 EST403438 KV1 Medicago truncatula cDNA clone pKV1-5M24, mRNA
sequence
Length = 586
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 479 gatgtctttgatccaaagttcaacattgtatctccaggagctga 522
>gb|AL373865.1|AL373865 MtBB03C08F1 MtBB Medicago truncatula cDNA clone MtBB03C08 T3, mRNA
sequence
Length = 476
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 401 gatgtctttgatccaaagttcaacattgtatctccaggagctga 444
>gb|BE997844.1|BE997844 EST429567 GVSN Medicago truncatula cDNA clone pGVSN-8I13, mRNA
sequence
Length = 505
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 397 gatgtctttgatccaaagttcaacattgtatctccaggagctga 440
>gb|BE998469.1|BE998469 EST430192 GVSN Medicago truncatula cDNA clone pGVSN-12E7, mRNA
sequence
Length = 616
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 379 gatgtctttgatccaaagttcaacattgtatctccaggagctga 422
>gb|BE999871.1|BE999871 EST431594 GVSN Medicago truncatula cDNA clone pGVSN-24F16, mRNA
sequence
Length = 598
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 269 gatgtctttgatccaaagttcaacattgtatctccaggagctga 312
>gb|BG580357.1|BG580357 EST482082 GVN Medicago truncatula cDNA clone pGVN-39J23 5' end,
mRNA sequence
Length = 333
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 277 gatgtctttgatccaaagttcaacattgtatctccaggagctga 320
>gb|BG580608.1|BG580608 EST482335 GVN Medicago truncatula cDNA clone pGVN-61E11 5' end,
mRNA sequence
Length = 677
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 197 gatgtctttgatccaaagttcaacattgtatctccaggagctga 240
>gb|BG580619.1|BG580619 EST482346 GVN Medicago truncatula cDNA clone pGVN-61G9 5' end, mRNA
sequence
Length = 652
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 367 gatgtctttgatccaaagttcaacattgtatctccaggagctga 410
>gb|BG580888.1|BG580888 EST482617 GVN Medicago truncatula cDNA clone pGVN-62L6 5' end, mRNA
sequence
Length = 612
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 351 gatgtctttgatccaaagttcaacattgtatctccaggagctga 394
>gb|BG581612.1|BG581612 EST483347 GVN Medicago truncatula cDNA clone pGVN-65I10 5' end,
mRNA sequence
Length = 782
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 355 gatgtctttgatccaaagttcaacattgtatctccaggagctga 398
>gb|BG581937.1|BG581937 EST483673 GVN Medicago truncatula cDNA clone pGVN-66C18 5' end,
mRNA sequence
Length = 806
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 181 gatgtctttgatccaaagttcaacattgtatctccaggagctga 224
>gb|BG582007.1|BG582007 EST483744 GVN Medicago truncatula cDNA clone pGVN-66O18 5' end,
mRNA sequence
Length = 793
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 649 gatgtctttgatccaaagttcaacattgtatctccaggagctga 692
>gb|BG583279.1|BG583279 EST485030 GVN Medicago truncatula cDNA clone pGVN-72O19 5' end,
mRNA sequence
Length = 785
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 397 gatgtctttgatccaaagttcaacattgtatctccaggagctga 440
>gb|BG583290.1|BG583290 EST485041 GVN Medicago truncatula cDNA clone pGVN-72A22 5' end,
mRNA sequence
Length = 703
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 295 gatgtctttgatccaaagttcaacattgtatctccaggagctga 338
>gb|BG583777.1|BG583777 EST485532 GVN Medicago truncatula cDNA clone pGVN-74O22 5' end,
mRNA sequence
Length = 719
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 448 gatgtctttgatccaaagttcaacattgtatctccaggagctga 491
>gb|BG648000.1|BG648000 EST509619 HOGA Medicago truncatula cDNA clone pHOGA-18D7 5' end,
mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 389 gatgtctttgatccaaagttcaacattgtatctccaggagctga 432
>gb|BQ146384.1|BQ146384 NF069E05FL1F1039 Developing flower Medicago truncatula cDNA clone
NF069E05FL 5', mRNA sequence
Length = 660
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||| ||||| || || |||||||| || |||||||||||||| || ||||| || ||||
Sbjct: 570 accgtgttgttcacggtatcgatgtttttgatccaaagttcaacattgtctcacccggag 629
Query: 61 ctga 64
||||
Sbjct: 630 ctga 633
>gb|CA917502.1|CA917502 EST641649 GPOD Medicago truncatula cDNA clone GPOD-36I18, mRNA
sequence
Length = 806
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 551 gatgtctttgatccaaagttcaacattgtatctccaggagctga 594
>gb|CA918151.1|CA918151 EST642298 GPOD Medicago truncatula cDNA clone GPOD-38M8, mRNA
sequence
Length = 673
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 29 gatgtctttgatccaaagttcaacattgtatctccaggagctga 72
>gb|CB892613.1|CB892613 EST645405 HOGA Medicago truncatula cDNA clone HOGA-19C4, mRNA
sequence
Length = 776
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 683 gatgtctttgatccaaagttcaacattgtatctccaggagctga 726
>gb|CB893069.1|CB893069 EST645861 HOGA Medicago truncatula cDNA clone HOGA-26N17, mRNA
sequence
Length = 724
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 536 gatgtctttgatccaaagttcaacattgtatctccaggagctga 579
>gb|CB893506.1|CB893506 EST646298 HOGA Medicago truncatula cDNA clone HOGA-28G21, mRNA
sequence
Length = 881
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 241 gatgtctttgatccaaagttcaacattgtatctccaggagctga 284
>gb|AJ500394.1|AJ500394 AJ500394 MTGIM Medicago truncatula cDNA clone mtgmacc120015h08,
mRNA sequence
Length = 572
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 425 gatgtctttgatccaaagttcaacattgtatctccaggagctga 382
>gb|AJ500895.1|AJ500895 AJ500895 MTGIM Medicago truncatula cDNA clone mtgmacc120021d06,
mRNA sequence
Length = 590
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 425 gatgtctttgatccaaagttcaacattgtatctccaggagctga 382
>gb|AJ499445.1|AJ499445 AJ499445 MTGIM Medicago truncatula cDNA clone mtgmacc120004d02,
mRNA sequence
Length = 571
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 299 gatgtctttgatccaaagttcaacattgtatctccaggagctga 342
>gb|CX529156.1|CX529156 s13dNF42F03MJ027_244370 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 600
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 407 gatgtctttgatccaaagttcaacattgtatctccaggagctga 450
>emb|AJ131943.1|MTR131943 Medicago truncatula mRNA for sucrose synthase
Length = 2728
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagctga 64
|||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 1579 gatgtctttgatccaaagttcaacattgtatctccaggagctga 1622
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,778
Number of Sequences: 392609
Number of extensions: 107778
Number of successful extensions: 6893
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6787
Number of HSP's gapped (non-prelim): 106
length of query: 589
length of database: 441,732,993
effective HSP length: 19
effective length of query: 570
effective length of database: 434,273,422
effective search space: 247535850540
effective search space used: 247535850540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)