BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.3
(792 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG645485.1|BG645485 EST507104 KV3 Medicago truncatula cD... 54 2e-005
gb|AL386312.1|AL386312 MtBC33H06F1 MtBC Medicago truncatula... 52 7e-005
gb|CX531134.1|CX531134 s13dNF22C09MJ067_248398 Methyl Jasmo... 52 7e-005
gb|AL389737.1|AL389737 MtBC57B02F1 MtBC Medicago truncatula... 46 0.004
gb|BF521396.1|BF521396 EST458872 DSIL Medicago truncatula c... 46 0.004
gb|BG453707.1|BG453707 NF100E09LF1F1068 Developing leaf Med... 46 0.004
gb|BG646762.1|BG646762 EST508381 HOGA Medicago truncatula c... 46 0.004
gb|BQ124710.1|BQ124710 EST610286 GLSD Medicago truncatula c... 46 0.004
gb|CG944398.1|CG944398 MBEBI73TR mth2 Medicago truncatula g... 44 0.018
gb|CA990600.1|CA990600 EST644108 GESD Medicago truncatula c... 42 0.070
gb|CX532491.1|CX532491 s13dNF66F03MJ027_271271 Methyl Jasmo... 42 0.070
gb|AC144723.5| Medicago truncatula clone mth2-7h1, WORKING ... 40 0.28
gb|AC146719.32| Medicago truncatula clone mth2-17f11, compl... 40 0.28
>gb|BG645485.1|BG645485 EST507104 KV3 Medicago truncatula cDNA clone pKV3-46K14 5' end,
mRNA sequence
Length = 814
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 399 gctccttgctgcaatgaaatttttgattgccgacactgccacaatga 445
|||||||| |||||||| |||||||||||||| || || ||||||||
Sbjct: 597 gctccttgttgcaatgagatttttgattgccgccattgtcacaatga 643
>gb|AL386312.1|AL386312 MtBC33H06F1 MtBC Medicago truncatula cDNA clone MtBC33H06 T3, mRNA
sequence
Length = 498
Score = 52.0 bits (26), Expect = 7e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 564 aattgcggtgtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgat 623
||||| |||||||||||||| || ||||| |||| | ||||| |||| ||||||||||
Sbjct: 332 aattgtggtgtttgcatgggcaagtacttttgtgatacatgcaagctctacgacgatgat 391
Query: 624 gtctctaaacagcagtatcactgcaacggatgtggaat 661
| ||||| |||||||| || || || || ||||||||
Sbjct: 392 atatctaagcagcagtaccattgtaatggctgtggaat 429
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 408 tgcaatgaaatttttgattgccgacactgccacaatga 445
|||||||| |||||||||||||| || || ||||||||
Sbjct: 176 tgcaatgagatttttgattgccgccattgtcacaatga 213
>gb|CX531134.1|CX531134 s13dNF22C09MJ067_248398 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 408
Score = 52.0 bits (26), Expect = 7e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 564 aattgcggtgtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgat 623
||||| |||||||||||||| || ||||| |||| | ||||| |||| ||||||||||
Sbjct: 178 aattgtggtgtttgcatgggcaagtacttttgtgatacatgcaagctctacgacgatgat 237
Query: 624 gtctctaaacagcagtatcactgcaacggatgtggaat 661
| ||||| |||||||| || || || || ||||||||
Sbjct: 238 atatctaagcagcagtaccattgtaatggctgtggaat 275
>gb|AL389737.1|AL389737 MtBC57B02F1 MtBC Medicago truncatula cDNA clone MtBC57B02 T3, mRNA
sequence
Length = 497
Score = 46.1 bits (23), Expect = 0.004
Identities = 92/115 (80%)
Strand = Plus / Plus
Query: 609 ctcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtaga 668
||||| || |||||||| ||||| |||||||| || |||| || |||||||| || |||
Sbjct: 204 ctctttgatgatgatgtatctaagcagcagtaccattgcagtggttgtggaatttgcaga 263
Query: 669 atcggagggagggagaatttcttccactgttcaaaatgtggatgttgctattcaa 723
| |||||| || |||||||||||||| | || ||||| |||||||| ||||
Sbjct: 264 actggagggtctgaaaatttcttccactgctacaagtgtggttgttgctactcaa 318
>gb|BF521396.1|BF521396 EST458872 DSIL Medicago truncatula cDNA clone pDSIL-43C16, mRNA
sequence
Length = 710
Score = 46.1 bits (23), Expect = 0.004
Identities = 92/115 (80%)
Strand = Plus / Plus
Query: 609 ctcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtaga 668
||||| || |||||||| ||||| |||||||| || |||| || |||||||| || |||
Sbjct: 284 ctctttgatgatgatgtatctaagcagcagtaccattgcagtggttgtggaatttgcaga 343
Query: 669 atcggagggagggagaatttcttccactgttcaaaatgtggatgttgctattcaa 723
| |||||| || |||||||||||||| | || ||||| |||||||| ||||
Sbjct: 344 actggagggtctgaaaatttcttccactgctacaagtgtggttgttgctactcaa 398
>gb|BG453707.1|BG453707 NF100E09LF1F1068 Developing leaf Medicago truncatula cDNA clone
NF100E09LF 5', mRNA sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.004
Identities = 92/115 (80%)
Strand = Plus / Plus
Query: 609 ctcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtaga 668
||||| || |||||||| ||||| |||||||| || |||| || |||||||| || |||
Sbjct: 64 ctctttgatgatgatgtatctaagcagcagtaccattgcagtggttgtggaatttgcaga 123
Query: 669 atcggagggagggagaatttcttccactgttcaaaatgtggatgttgctattcaa 723
| |||||| || |||||||||||||| | || ||||| |||||||| ||||
Sbjct: 124 actggagggtctgaaaatttcttccactgctacaagtgtggttgttgctactcaa 178
>gb|BG646762.1|BG646762 EST508381 HOGA Medicago truncatula cDNA clone pHOGA-9B12 5' end,
mRNA sequence
Length = 669
Score = 46.1 bits (23), Expect = 0.004
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 408 tgcaatgaaatttttgattgccgacactgccacaatgaaactaagaattccattaaaatt 467
|||||||||||||| |||||| |||| ||||| || ||| | |||||||| ||| || ||
Sbjct: 85 tgcaatgaaattttcgattgcagacattgccataacgaatccaagaattcgattcaagtt 144
Query: 468 gat 470
|||
Sbjct: 145 gat 147
>gb|BQ124710.1|BQ124710 EST610286 GLSD Medicago truncatula cDNA clone pGLSD-37C17, mRNA
sequence
Length = 699
Score = 46.1 bits (23), Expect = 0.004
Identities = 92/115 (80%)
Strand = Plus / Plus
Query: 609 ctcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtaga 668
||||| || |||||||| ||||| |||||||| || |||| || |||||||| || |||
Sbjct: 277 ctctttgatgatgatgtatctaagcagcagtaccattgcagtggttgtggaatttgcaga 336
Query: 669 atcggagggagggagaatttcttccactgttcaaaatgtggatgttgctattcaa 723
| |||||| || |||||||||||||| | || ||||| |||||||| ||||
Sbjct: 337 actggagggtctgaaaatttcttccactgctacaagtgtggttgttgctactcaa 391
>gb|CG944398.1|CG944398 MBEBI73TR mth2 Medicago truncatula genomic clone 19M1, DNA sequence
Length = 889
Score = 44.1 bits (22), Expect = 0.018
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 564 aattgcggtgtttgcatggggaaatacttctgtggtttgtgcaaactcttcgacgatgat 623
||||| |||||||||||||| || ||||| |||| | ||||| |||| ||||||||||
Sbjct: 157 aattgtggtgtttgcatgggcaagtacttttgtgatacatgcaagctctacgacgatgat 216
Query: 624 gt 625
||
Sbjct: 217 gt 218
>gb|CA990600.1|CA990600 EST644108 GESD Medicago truncatula cDNA clone GESD-29A20, mRNA
sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.070
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 609 ctcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtaga 668
||||| || |||||||| ||||| |||||||| || |||| || |||||||| || |||
Sbjct: 497 ctctttgatgatgatgtatctaagcagcagtaccattgcagtggttgtggaatttgcaga 556
Query: 669 atcggagggagggagaatttcttccactg 697
| |||||| || ||||||||||||||
Sbjct: 557 actggagggtctgaaaatttcttccactg 585
>gb|CX532491.1|CX532491 s13dNF66F03MJ027_271271 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.070
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 609 ctcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatgtaga 668
||||| || |||||||| ||||| |||||||| || |||| || |||||||| || |||
Sbjct: 565 ctctttgatgatgatgtatctaagcagcagtaccattgcagtggttgtggaatttgcaga 624
Query: 669 atcggagggagggagaatttcttccactg 697
| |||||| || ||||||||||||||
Sbjct: 625 actggagggtctgaaaatttcttccactg 653
>gb|AC144723.5| Medicago truncatula clone mth2-7h1, WORKING DRAFT SEQUENCE, 18
unordered pieces
Length = 64100
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 440 caatgaaactaagaattcca 459
||||||||||||||||||||
Sbjct: 31751 caatgaaactaagaattcca 31770
>gb|AC146719.32| Medicago truncatula clone mth2-17f11, complete sequence
Length = 127364
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 332 tgagaaatttgagaaaggga 351
||||||||||||||||||||
Sbjct: 117266 tgagaaatttgagaaaggga 117247
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 211,855
Number of Sequences: 392609
Number of extensions: 211855
Number of successful extensions: 15164
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15129
Number of HSP's gapped (non-prelim): 35
length of query: 792
length of database: 441,732,993
effective HSP length: 20
effective length of query: 772
effective length of database: 433,880,813
effective search space: 334955987636
effective search space used: 334955987636
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)