BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3198833.2.1
         (593 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC144563.14|  Medicago truncatula clone mth2-5c24, comple...    56   3e-006
gb|AC144728.11|  Medicago truncatula clone mth2-6g7, complet...    40   0.21 
gb|AC136840.24|  Medicago truncatula clone mth2-33n3, comple...    40   0.21 
gb|AC136288.23|  Medicago truncatula clone mth2-13o7, comple...    40   0.21 
gb|AC134522.9|  Medicago truncatula clone mth2-12g4, complet...    40   0.21 

>gb|AC144563.14| Medicago truncatula clone mth2-5c24, complete sequence
          Length = 111375

 Score = 56.0 bits (28), Expect = 3e-006
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 136   ttcttccgcaactgcgtcatctccggcaccattgacttcatctt 179
             |||| ||||||||| || |||||||| |||||||||||||||||
Sbjct: 32800 ttctaccgcaactgtgttatctccggtaccattgacttcatctt 32843



>gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete sequence
          Length = 105161

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 136   ttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggc 183
             |||| |||||||||||  ||||| || ||||| |||||||| ||||||
Sbjct: 28174 ttctaccgcaactgcgaaatctctggtaccatagacttcatattcggc 28221



>gb|AC136840.24| Medicago truncatula clone mth2-33n3, complete sequence
          Length = 106528

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 136   ttcttccgcaactgcgtcatctccggcaccattgacttcatcttcggc 183
             |||| |||||||||||  ||||| || ||||| |||||||| ||||||
Sbjct: 74542 ttctaccgcaactgcgaaatctctggtaccatagacttcatattcggc 74589



>gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete sequence
          Length = 110437

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ggcaccattgacttcatctt 179
              ||||||||||||||||||||
Sbjct: 100019 ggcaccattgacttcatctt 100000



>gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete sequence
          Length = 129197

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ggcaccattgacttcatctt 179
              ||||||||||||||||||||
Sbjct: 110278 ggcaccattgacttcatctt 110259



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,452
Number of Sequences: 392609
Number of extensions: 50452
Number of successful extensions: 3371
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3360
Number of HSP's gapped (non-prelim): 11
length of query: 593
length of database: 441,732,993
effective HSP length: 19
effective length of query: 574
effective length of database: 434,273,422
effective search space: 249272944228
effective search space used: 249272944228
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)