BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3198766.2.1
         (1273 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC122726.21|  Medicago truncatula clone mth2-23o24, compl...    42   0.11 
gb|AC146776.31|  Medicago truncatula clone mth2-125i24, WORK...    42   0.11 

>gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete sequence
          Length = 130999

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                        
Query: 716  cagaggatgccaaggtgccgctggggcttcttccacgtggtcaacaacgactacacgcac 775
            |||||||||||||||||  | ||||| ||||| ||  | || ||||| |||||||| || 
Sbjct: 9639 cagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacactcat 9698

                             
Query: 776  tggctcatgtacgccat 792
            ||||| ||||| |||||
Sbjct: 9699 tggcttatgtatgccat 9715



>gb|AC146776.31| Medicago truncatula clone mth2-125i24, WORKING DRAFT SEQUENCE, 2
             unordered pieces
          Length = 132037

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                         
Query: 716   cagaggatgccaaggtgccgctggggcttcttccacgtggtcaacaacgactacacgcac 775
             |||||||||||||||||  | ||||| ||||| ||  | || ||||| |||||||| || 
Sbjct: 82825 cagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacactcat 82766

                              
Query: 776   tggctcatgtacgccat 792
             ||||| ||||| |||||
Sbjct: 82765 tggcttatgtatgccat 82749



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,460
Number of Sequences: 392609
Number of extensions: 150460
Number of successful extensions: 9947
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9941
Number of HSP's gapped (non-prelim): 6
length of query: 1273
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1253
effective length of database: 433,880,813
effective search space: 543652658689
effective search space used: 543652658689
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)