BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ146639.1|BQ146639 NF019H06FL1F1059 Developing flower M... 42 0.060
gb|BQ146781.1|BQ146781 NF028C04FL1F1033 Developing flower M... 42 0.060
gb|BQ152280.1|BQ152280 NF015C11IR1F1085 Irradiated Medicago... 42 0.060
gb|BQ152822.1|BQ152822 NF025E02IR1F1019 Irradiated Medicago... 42 0.060
gb|AW688488.2|AW688488 NF008B12ST1F1000 Developing stem Med... 40 0.24
gb|AW687949.2|AW687949 NF001D01ST1F1000 Developing stem Med... 40 0.24
gb|BG457717.1|BG457717 NF106B09PL1F1075 Phosphate starved l... 40 0.24
gb|BQ135436.1|BQ135436 NF006A09EC1F1066 Elicited cell cultu... 40 0.24
gb|BQ151951.1|BQ151951 NF002E08IR1F1066 Irradiated Medicago... 40 0.24
gb|CX537901.1|CX537901 s13dNF38B03GS025_459040 Germinating ... 40 0.24
>gb|BQ146639.1|BQ146639 NF019H06FL1F1059 Developing flower Medicago truncatula cDNA clone
NF019H06FL 5', mRNA sequence
Length = 827
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 102 gaattcggcacgaggctcgag 122
>gb|BQ146781.1|BQ146781 NF028C04FL1F1033 Developing flower Medicago truncatula cDNA clone
NF028C04FL 5', mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 10 gaattcggcacgaggctcgag 30
>gb|BQ152280.1|BQ152280 NF015C11IR1F1085 Irradiated Medicago truncatula cDNA clone
NF015C11IR 5', mRNA sequence
Length = 799
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 104 gaattcggcacgaggctcgag 124
>gb|BQ152822.1|BQ152822 NF025E02IR1F1019 Irradiated Medicago truncatula cDNA clone
NF025E02IR 5', mRNA sequence
Length = 274
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 10 gaattcggcacgaggctcgag 30
>gb|AW688488.2|AW688488 NF008B12ST1F1000 Developing stem Medicago truncatula cDNA clone
NF008B12ST 5', mRNA sequence
Length = 806
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 102 gaattcggcacgaggctcga 121
>gb|AW687949.2|AW687949 NF001D01ST1F1000 Developing stem Medicago truncatula cDNA clone
NF001D01ST 5', mRNA sequence
Length = 418
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 96 gaattcggcacgaggctcga 115
>gb|BG457717.1|BG457717 NF106B09PL1F1075 Phosphate starved leaf Medicago truncatula cDNA
clone NF106B09PL 5', mRNA sequence
Length = 657
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 354 aatgaaggttttagcaggggcctccagatatc 385
||||||| ||| |||||||| |||||||||||
Sbjct: 26 aatgaagctttcagcaggggtctccagatatc 57
>gb|BQ135436.1|BQ135436 NF006A09EC1F1066 Elicited cell culture Medicago truncatula cDNA
clone NF006A09EC 5', mRNA sequence
Length = 855
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcgagaca 24
|||||||||||||||||| |||||
Sbjct: 103 gaattcggcacgaggctccagaca 126
>gb|BQ151951.1|BQ151951 NF002E08IR1F1066 Irradiated Medicago truncatula cDNA clone
NF002E08IR 5', mRNA sequence
Length = 806
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 102 gaattcggcacgaggctcga 121
>gb|CX537901.1|CX537901 s13dNF38B03GS025_459040 Germinating Seed Medicago truncatula
cDNA, mRNA sequence
Length = 255
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggctcga 20
||||||||||||||||||||
Sbjct: 11 gaattcggcacgaggctcga 30
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 185,533
Number of Sequences: 392609
Number of extensions: 185533
Number of successful extensions: 25306
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25292
Number of HSP's gapped (non-prelim): 14
length of query: 675
length of database: 441,732,993
effective HSP length: 19
effective length of query: 656
effective length of database: 434,273,422
effective search space: 284883364832
effective search space used: 284883364832
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)