BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115208.2.3
         (672 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR500439.1|  mth2-177B20RM1 BAC end, cultivar Jemalong A...    46   0.004
gb|AC146567.10|  Medicago truncatula clone mth2-99p24, compl...    46   0.004
gb|CX538744.1|CX538744  s13dNF0AA03GS017_460742 Germinating ...    42   0.059
>emb|CR500439.1| mth2-177B20RM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 759

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 59  ttccgcaccttcatcgagatcgtcttcgagaaccc 93
           |||||||||||| | |||||| |||||||||||||
Sbjct: 114 ttccgcaccttcgttgagatcatcttcgagaaccc 148
>gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete sequence
          Length = 141672

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 59    ttccgcaccttcatcgagatcgtcttcgagaaccc 93
             |||||||||||| | |||||| |||||||||||||
Sbjct: 25716 ttccgcaccttcgttgagatcatcttcgagaaccc 25750
>gb|CX538744.1|CX538744 s13dNF0AA03GS017_460742 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 408

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 59  ttccgcaccttcatcgagatcgtcttcgagaaccccg 95
           ||||| |||||||| || ||| |||||||||||||||
Sbjct: 330 ttccgtaccttcattgaaatcatcttcgagaaccccg 366
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,169
Number of Sequences: 392609
Number of extensions: 131169
Number of successful extensions: 10788
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10780
Number of HSP's gapped (non-prelim): 8
length of query: 672
length of database: 441,732,993
effective HSP length: 19
effective length of query: 653
effective length of database: 434,273,422
effective search space: 283580544566
effective search space used: 283580544566
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)