BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.3
(1548 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC146558.16| Medicago truncatula clone mth2-12a23, WORKI... 42 0.14
>gb|AC146558.16| Medicago truncatula clone mth2-12a23, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 126642
Score = 42.1 bits (21), Expect = 0.14
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 854 gatgccgtccgtgttggggctgtcgccgggggc 886
|||||| || |||||||||||||| ||||||||
Sbjct: 67075 gatgccatctgtgttggggctgtcaccgggggc 67107
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 267,475
Number of Sequences: 392609
Number of extensions: 267475
Number of successful extensions: 22482
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22478
Number of HSP's gapped (non-prelim): 4
length of query: 1548
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1528
effective length of database: 433,880,813
effective search space: 662969882264
effective search space used: 662969882264
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)