BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106160.2.1
         (788 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI308316.1|BI308316  EST529726 GPOD Medicago truncatula c...   123   2e-026
gb|AC130653.31|  Medicago truncatula clone mth1-13b3, comple...   107   1e-021
gb|AC135312.14|  Medicago truncatula clone mth2-34c3, WORKIN...   107   1e-021
gb|AC158502.3|  Medicago truncatula chromosome 7 BAC clone m...    92   8e-017
gb|AC165429.2|  Medicago truncatula chromosome 7 clone mth2-...    92   8e-017
gb|CX533929.1|CX533929  s13dNF0AG07MJ052_321623 Methyl Jasmo...    42   0.070
gb|AC138451.15|  Medicago truncatula clone mth2-24k1, comple...    42   0.070
gb|AC146909.23|  Medicago truncatula clone mth2-57e16, compl...    42   0.070
gb|AC151742.9|  Medicago truncatula clone mth2-83e4, complet...    42   0.070
gb|AC160013.10|  Medicago truncatula clone mth2-162b23, WORK...    40   0.28 
gb|AC159535.5|  Medicago truncatula clone mth2-152f22, WORKI...    40   0.28 
>gb|BI308316.1|BI308316 EST529726 GPOD Medicago truncatula cDNA clone pGPOD-2B20 5' end,
           mRNA sequence
          Length = 698

 Score =  123 bits (62), Expect = 2e-026
 Identities = 140/166 (84%)
 Strand = Plus / Plus

                                                                       
Query: 3   gctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatcgc 62
           ||||| ||| ||||||| || || || |||||||| |||||||| || || |||||||| 
Sbjct: 471 gctgctgttttgcattacacttataccaaattttctgatttgacttcaaggcgtgatcgg 530

                                                                       
Query: 63  tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
           ||||| ||||| ||||||||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 531 tgtggctgcaaacctacaaaagatgatgtaaaaagatgtttcatgctggactttgacaga 590

                                                         
Query: 123 gcagcttttataattgcatcaactgctagtgaagaagaaatgcttc 168
           || ||||| || ||||| |||||||| | ||| |||||||||||||
Sbjct: 591 gctgctttcatcattgcttcaactgcaactgaggaagaaatgcttc 636
>gb|AC130653.31| Medicago truncatula clone mth1-13b3, complete sequence
          Length = 166135

 Score =  107 bits (54), Expect = 1e-021
 Identities = 105/122 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
             ||||||| ||| | ||||| |||||| | ||||| |||||||| || |||||||||||||
Sbjct: 47984 aggctgctgttttacattacacatacgccaaattctcagatttaacttctagacgtgatc 47925

                                                                         
Query: 61    gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
             | ||||| ||||| ||||||||||||||||| || ||||| |||||||| || |||||||
Sbjct: 47924 gttgtggttgcaaacctacaaaagaagatgtcaaaagatgcttcatgttggaatttgaca 47865

               
Query: 121   ga 122
             ||
Sbjct: 47864 ga 47863
>gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKING DRAFT SEQUENCE, 4 ordered
             pieces
          Length = 125828

 Score =  107 bits (54), Expect = 1e-021
 Identities = 105/122 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
             ||||||| ||| | ||||| |||||| | ||||| |||||||| || |||||||||||||
Sbjct: 95194 aggctgctgttttacattacacatacgccaaattctcagatttaacttctagacgtgatc 95135

                                                                         
Query: 61    gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
             | ||||| ||||| ||||||||||||||||| || ||||| |||||||| || |||||||
Sbjct: 95134 gttgtggttgcaaacctacaaaagaagatgtcaaaagatgcttcatgttggaatttgaca 95075

               
Query: 121   ga 122
             ||
Sbjct: 95074 ga 95073
>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete sequence
          Length = 124955

 Score = 91.7 bits (46), Expect = 8e-017
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                          
Query: 3      gctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatcgc 62
              ||||| ||| ||||||| || || || |||||||| |||||||| || || |||||||| 
Sbjct: 110531 gctgctgttttgcattacacttataccaaattttctgatttgacttcaaggcgtgatcgg 110590

                                                                          
Query: 63     tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
              ||||| ||||| ||||||||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 110591 tgtggctgcaaacctacaaaagatgatgtaaaaagatgtttcatgctggactttgacaga 110650

                
Query: 123    gc 124
              ||
Sbjct: 110651 gc 110652
>gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-59p23, *** SEQUENCING IN
            PROGRESS ***, 3 ordered pieces
          Length = 106073

 Score = 91.7 bits (46), Expect = 8e-017
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                        
Query: 3    gctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatcgc 62
            ||||| ||| ||||||| || || || |||||||| |||||||| || || |||||||| 
Sbjct: 9568 gctgctgttttgcattacacttataccaaattttctgatttgacttcaaggcgtgatcgg 9627

                                                                        
Query: 63   tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
            ||||| ||||| ||||||||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 9628 tgtggctgcaaacctacaaaagatgatgtaaaaagatgtttcatgctggactttgacaga 9687

              
Query: 123  gc 124
            ||
Sbjct: 9688 gc 9689
>gb|CX533929.1|CX533929 s13dNF0AG07MJ052_321623 Methyl Jasmonate-Elicited Root Cell
           Suspension Culture Medicago truncatula cDNA, mRNA
           sequence
          Length = 547

 Score = 42.1 bits (21), Expect = 0.070
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 593 aagaaaaggaagaaaagaaag 613
           |||||||||||||||||||||
Sbjct: 69  aagaaaaggaagaaaagaaag 49
>gb|AC138451.15| Medicago truncatula clone mth2-24k1, complete sequence
          Length = 123909

 Score = 42.1 bits (21), Expect = 0.070
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 593    aagaaaaggaagaaaagaaag 613
              |||||||||||||||||||||
Sbjct: 122231 aagaaaaggaagaaaagaaag 122251
>gb|AC146909.23| Medicago truncatula clone mth2-57e16, complete sequence
          Length = 121218

 Score = 42.1 bits (21), Expect = 0.070
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 593   aagaaaaggaagaaaagaaag 613
             |||||||||||||||||||||
Sbjct: 77360 aagaaaaggaagaaaagaaag 77380
>gb|AC151742.9| Medicago truncatula clone mth2-83e4, complete sequence
          Length = 99595

 Score = 42.1 bits (21), Expect = 0.070
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 593   aagaaaaggaagaaaagaaag 613
             |||||||||||||||||||||
Sbjct: 71954 aagaaaaggaagaaaagaaag 71974
>gb|AC160013.10| Medicago truncatula clone mth2-162b23, WORKING DRAFT SEQUENCE, 4 ordered
              pieces
          Length = 117818

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    tatcatatatatattttttg 574
              ||||||||||||||||||||
Sbjct: 116502 tatcatatatatattttttg 116483
>gb|AC159535.5| Medicago truncatula clone mth2-152f22, WORKING DRAFT SEQUENCE, 7
              unordered pieces
          Length = 129622

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    tatcatatatatattttttg 574
              ||||||||||||||||||||
Sbjct: 122917 tatcatatatatattttttg 122898
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 299,965
Number of Sequences: 392609
Number of extensions: 299965
Number of successful extensions: 30205
Number of sequences better than  0.5: 11
Number of HSP's better than  0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30113
Number of HSP's gapped (non-prelim): 92
length of query: 788
length of database: 441,732,993
effective HSP length: 20
effective length of query: 768
effective length of database: 433,880,813
effective search space: 333220464384
effective search space used: 333220464384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)