BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI308316.1|BI308316 EST529726 GPOD Medicago truncatula c... 123 2e-026
gb|AC130653.31| Medicago truncatula clone mth1-13b3, comple... 107 1e-021
gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKIN... 107 1e-021
gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone m... 92 8e-017
gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-... 92 8e-017
gb|CX533929.1|CX533929 s13dNF0AG07MJ052_321623 Methyl Jasmo... 42 0.070
gb|AC138451.15| Medicago truncatula clone mth2-24k1, comple... 42 0.070
gb|AC146909.23| Medicago truncatula clone mth2-57e16, compl... 42 0.070
gb|AC151742.9| Medicago truncatula clone mth2-83e4, complet... 42 0.070
gb|AC160013.10| Medicago truncatula clone mth2-162b23, WORK... 40 0.28
gb|AC159535.5| Medicago truncatula clone mth2-152f22, WORKI... 40 0.28
>gb|BI308316.1|BI308316 EST529726 GPOD Medicago truncatula cDNA clone pGPOD-2B20 5' end,
mRNA sequence
Length = 698
Score = 123 bits (62), Expect = 2e-026
Identities = 140/166 (84%)
Strand = Plus / Plus
Query: 3 gctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatcgc 62
||||| ||| ||||||| || || || |||||||| |||||||| || || ||||||||
Sbjct: 471 gctgctgttttgcattacacttataccaaattttctgatttgacttcaaggcgtgatcgg 530
Query: 63 tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
||||| ||||| ||||||||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 531 tgtggctgcaaacctacaaaagatgatgtaaaaagatgtttcatgctggactttgacaga 590
Query: 123 gcagcttttataattgcatcaactgctagtgaagaagaaatgcttc 168
|| ||||| || ||||| |||||||| | ||| |||||||||||||
Sbjct: 591 gctgctttcatcattgcttcaactgcaactgaggaagaaatgcttc 636
>gb|AC130653.31| Medicago truncatula clone mth1-13b3, complete sequence
Length = 166135
Score = 107 bits (54), Expect = 1e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||| | ||||| |||||| | ||||| |||||||| || |||||||||||||
Sbjct: 47984 aggctgctgttttacattacacatacgccaaattctcagatttaacttctagacgtgatc 47925
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
| ||||| ||||| ||||||||||||||||| || ||||| |||||||| || |||||||
Sbjct: 47924 gttgtggttgcaaacctacaaaagaagatgtcaaaagatgcttcatgttggaatttgaca 47865
Query: 121 ga 122
||
Sbjct: 47864 ga 47863
>gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 125828
Score = 107 bits (54), Expect = 1e-021
Identities = 105/122 (86%)
Strand = Plus / Minus
Query: 1 aggctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatc 60
||||||| ||| | ||||| |||||| | ||||| |||||||| || |||||||||||||
Sbjct: 95194 aggctgctgttttacattacacatacgccaaattctcagatttaacttctagacgtgatc 95135
Query: 61 gctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgaca 120
| ||||| ||||| ||||||||||||||||| || ||||| |||||||| || |||||||
Sbjct: 95134 gttgtggttgcaaacctacaaaagaagatgtcaaaagatgcttcatgttggaatttgaca 95075
Query: 121 ga 122
||
Sbjct: 95074 ga 95073
>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete sequence
Length = 124955
Score = 91.7 bits (46), Expect = 8e-017
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 3 gctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatcgc 62
||||| ||| ||||||| || || || |||||||| |||||||| || || ||||||||
Sbjct: 110531 gctgctgttttgcattacacttataccaaattttctgatttgacttcaaggcgtgatcgg 110590
Query: 63 tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
||||| ||||| ||||||||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 110591 tgtggctgcaaacctacaaaagatgatgtaaaaagatgtttcatgctggactttgacaga 110650
Query: 123 gc 124
||
Sbjct: 110651 gc 110652
>gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-59p23, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 106073
Score = 91.7 bits (46), Expect = 8e-017
Identities = 103/122 (84%)
Strand = Plus / Plus
Query: 3 gctgcagttctgcattatacatacactaaattttcagatttgacatctagacgtgatcgc 62
||||| ||| ||||||| || || || |||||||| |||||||| || || ||||||||
Sbjct: 9568 gctgctgttttgcattacacttataccaaattttctgatttgacttcaaggcgtgatcgg 9627
Query: 63 tgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgttagattttgacaga 122
||||| ||||| ||||||||||| ||||| || |||||||||||| | || |||||||||
Sbjct: 9628 tgtggctgcaaacctacaaaagatgatgtaaaaagatgtttcatgctggactttgacaga 9687
Query: 123 gc 124
||
Sbjct: 9688 gc 9689
>gb|CX533929.1|CX533929 s13dNF0AG07MJ052_321623 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 547
Score = 42.1 bits (21), Expect = 0.070
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 69 aagaaaaggaagaaaagaaag 49
>gb|AC138451.15| Medicago truncatula clone mth2-24k1, complete sequence
Length = 123909
Score = 42.1 bits (21), Expect = 0.070
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 122231 aagaaaaggaagaaaagaaag 122251
>gb|AC146909.23| Medicago truncatula clone mth2-57e16, complete sequence
Length = 121218
Score = 42.1 bits (21), Expect = 0.070
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 77360 aagaaaaggaagaaaagaaag 77380
>gb|AC151742.9| Medicago truncatula clone mth2-83e4, complete sequence
Length = 99595
Score = 42.1 bits (21), Expect = 0.070
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 593 aagaaaaggaagaaaagaaag 613
|||||||||||||||||||||
Sbjct: 71954 aagaaaaggaagaaaagaaag 71974
>gb|AC160013.10| Medicago truncatula clone mth2-162b23, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 117818
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 555 tatcatatatatattttttg 574
||||||||||||||||||||
Sbjct: 116502 tatcatatatatattttttg 116483
>gb|AC159535.5| Medicago truncatula clone mth2-152f22, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 129622
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 555 tatcatatatatattttttg 574
||||||||||||||||||||
Sbjct: 122917 tatcatatatatattttttg 122898
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 299,965
Number of Sequences: 392609
Number of extensions: 299965
Number of successful extensions: 30205
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30113
Number of HSP's gapped (non-prelim): 92
length of query: 788
length of database: 441,732,993
effective HSP length: 20
effective length of query: 768
effective length of database: 433,880,813
effective search space: 333220464384
effective search space used: 333220464384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)