BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106156.2.1
(1016 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF519331.1|BF519331 EST456793 DSIL Medicago truncatula c... 157 2e-036
gb|BG646934.1|BG646934 EST508553 HOGA Medicago truncatula c... 157 2e-036
gb|BG647065.1|BG647065 EST508684 HOGA Medicago truncatula c... 157 2e-036
gb|CB891142.1|CB891142 EST648111 KV3 Medicago truncatula cD... 157 2e-036
gb|AW695791.1|AW695791 NF098F03ST1F1029 Developing stem Med... 139 5e-031
gb|AJ497814.1|AJ497814 AJ497814 MTFLOW Medicago truncatula ... 137 2e-030
gb|CX534988.1|CX534988 s13dNF28A09MJ069_388159 Methyl Jasmo... 115 8e-024
gb|CG937763.1|CG937763 MBECV65TR mth2 Medicago truncatula g... 113 3e-023
gb|CG946601.1|CG946601 MBEEE26TR mth2 Medicago truncatula g... 113 3e-023
gb|CG921448.1|CG921448 MBEMN29TR mth2 Medicago truncatula g... 96 7e-018
gb|AC161863.20| Medicago truncatula clone mth2-175f4, compl... 96 7e-018
gb|CG971190.1|CG971190 MBEDU72TRC mth2 Medicago truncatula ... 92 1e-016
gb|BE943067.1|BE943067 EST422646 MGHG Medicago truncatula c... 90 4e-016
gb|AL381349.1|AL381349 MtBC019E03R1 MtBC Medicago truncatul... 86 7e-015
gb|BE316206.2|BE316206 NF030F03LF1F1027 Developing leaf Med... 84 3e-014
gb|CG923927.1|CG923927 MBEHQ63TF mth2 Medicago truncatula g... 78 2e-012
gb|CG925142.1|CG925142 MBEND93TF mth2 Medicago truncatula g... 78 2e-012
gb|CG927378.1|CG927378 MBECD24TF mth2 Medicago truncatula g... 78 2e-012
gb|CG961162.1|CG961162 MBELL07TR mth2 Medicago truncatula g... 78 2e-012
emb|CR481986.1| mth2-145L11RM1 BAC end, cultivar Jemalong A... 78 2e-012
gb|AW774471.1|AW774471 EST333622 KV3 Medicago truncatula cD... 78 2e-012
gb|BI272466.1|BI272466 NF021H08FL1F1075 Developing flower M... 78 2e-012
gb|BE942980.1|BE942980 EST422559 MGHG Medicago truncatula c... 74 3e-011
gb|AW696699.2|AW696699 NF109H05ST1F1047 Developing stem Med... 56 6e-006
gb|CX527137.1|CX527137 s13dNF40D04AT042_514786 Aphid-Infect... 50 4e-004
gb|AL386203.1|AL386203 MtBC33B12F1 MtBC Medicago truncatula... 48 0.001
gb|BG453426.1|BG453426 NF096D10LF1F1079 Developing leaf Med... 48 0.001
gb|CA917136.1|CA917136 EST641283 GPOD Medicago truncatula c... 46 0.006
gb|CG936944.1|CG936944 MBECC74TR mth2 Medicago truncatula g... 42 0.090
gb|AL377539.1|AL377539 MtBB32C08F1 MtBB Medicago truncatula... 42 0.090
gb|BI271915.1|BI271915 NF016C03FL1F1021 Developing flower M... 42 0.090
gb|AC146708.18| Medicago truncatula clone mth2-80a22, WORKI... 42 0.090
emb|CR331519.1| mte1-60N17FM1 BAC end, cultivar Jemalong A1... 40 0.36
emb|CR317109.1| mte1-41O20RM1 BAC end, cultivar Jemalong A1... 40 0.36
gb|AC147002.20| Medicago truncatula clone mth2-151m16, comp... 40 0.36
gb|AC139343.22| Medicago truncatula clone mth2-32l12, WORKI... 40 0.36
gb|AC160242.7| Medicago truncatula clone mth2-65g16, WORKIN... 40 0.36
gb|AC170084.6| Medicago truncatula clone mth2-156k10, WORKI... 40 0.36
gb|AC157778.9| Medicago truncatula clone mth2-155p7, WORKIN... 40 0.36
gb|AC150844.30| Medicago truncatula clone mth2-104a5, WORKI... 40 0.36
>gb|BF519331.1|BF519331 EST456793 DSIL Medicago truncatula cDNA clone pDSIL-20K16, mRNA
sequence
Length = 498
Score = 157 bits (79), Expect = 2e-036
Identities = 244/299 (81%)
Strand = Plus / Minus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| ||||| | |
Sbjct: 331 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctactttacca 272
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
|||| |||||| | || ||||| ||||| |||||||| | ||| || ||||||||||||
Sbjct: 271 ggctttgccttttcaagagctttgacatgggcatcaacaagatcggtaacatcaatataa 212
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctgga 654
|||| ||||| |||||||||| |||| ||||||||||||| ||||||| || || ||
Sbjct: 211 tctcgaatgcatgttccatcaggtgtgttataatctgttcctgtaaccttcaagccaggc 152
Query: 655 atgactcctaatgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttct 714
|| | || |||||||||||||| || || || || |||||||| || ||||| ||
Sbjct: 151 ataataccgcgagctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctca 92
Query: 715 ggcctaggagcctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| || || |||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 91 ggtcttggtgcctcacctaatctcccttcagggtctgatccaatcacattgaaatatct 33
>gb|BG646934.1|BG646934 EST508553 HOGA Medicago truncatula cDNA clone pHOGA-15O23 5' end,
mRNA sequence
Length = 775
Score = 157 bits (79), Expect = 2e-036
Identities = 244/299 (81%)
Strand = Plus / Minus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| ||||| | |
Sbjct: 521 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctactttacca 462
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
|||| |||||| | || ||||| ||||| |||||||| | ||| || ||||||||||||
Sbjct: 461 ggctttgccttttcaagagctttgacatgggcatcaacaagatcggtaacatcaatataa 402
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctgga 654
|||| ||||| |||||||||| |||| ||||||||||||| ||||||| || || ||
Sbjct: 401 tctcgaatgcatgttccatcaggtgtgttataatctgttcctgtaaccttcaagccaggc 342
Query: 655 atgactcctaatgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttct 714
|| | || |||||||||||||| || || || || |||||||| || ||||| ||
Sbjct: 341 ataataccgcgagctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctca 282
Query: 715 ggcctaggagcctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| || || |||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 281 ggtcttggtgcctcacctaatctcccttcagggtctgatccaatcacattgaaatatct 223
Score = 77.8 bits (39), Expect = 2e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagg 896
|||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 179 atgatatcttctgccatcttcttagcttttccatatggattgatagg 133
>gb|BG647065.1|BG647065 EST508684 HOGA Medicago truncatula cDNA clone pHOGA-15H17 5' end,
mRNA sequence
Length = 713
Score = 157 bits (79), Expect = 2e-036
Identities = 244/299 (81%)
Strand = Plus / Minus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| ||||| | |
Sbjct: 548 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctactttacca 489
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
|||| |||||| | || ||||| ||||| |||||||| | ||| || ||||||||||||
Sbjct: 488 ggctttgccttttcaagagctttgacatgggcatcaacaagatcggtaacatcaatataa 429
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctgga 654
|||| ||||| |||||||||| |||| ||||||||||||| ||||||| || || ||
Sbjct: 428 tctcgaatgcatgttccatcaggtgtgttataatctgttcctgtaaccttcaagccaggc 369
Query: 655 atgactcctaatgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttct 714
|| | || |||||||||||||| || || || || |||||||| || ||||| ||
Sbjct: 368 ataataccgcgagctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctca 309
Query: 715 ggcctaggagcctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| || || |||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 308 ggtcttggtgcctcacctaatctcccttcagggtctgatccaatcacattgaaatatct 250
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
|||||||| |||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 206 atgatatcttctgccatcttcttagcttttccatatggattgataggtttctgttctgtt 147
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtactggagtaaat 968
|||||||||| |||||||| || ||||| || || || ||||||||||| || |||||
Sbjct: 146 tcttctgtaattggcatcttttcaggttccccatatgttgcacatgtacttgaataaat 88
>gb|CB891142.1|CB891142 EST648111 KV3 Medicago truncatula cDNA clone KV3-49E16, mRNA
sequence
Length = 711
Score = 157 bits (79), Expect = 2e-036
Identities = 244/299 (81%)
Strand = Plus / Plus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| ||||| | |
Sbjct: 352 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctactttacca 411
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
|||| |||||| | || ||||| ||||| |||||||| | ||| || ||||||||||||
Sbjct: 412 ggctttgccttttcaagagctttgacatgggcatcaacaagatcggtaacatcaatataa 471
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctgga 654
|||| ||||| |||||||||| |||| ||||||||||||| ||||||| || || ||
Sbjct: 472 tctcgaatgcatgttccatcaggtgtgttataatctgttcctgtaaccttcaagccaggc 531
Query: 655 atgactcctaatgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttct 714
|| | || |||||||||||||| || || || || |||||||| || ||||| ||
Sbjct: 532 ataataccgcgagctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctca 591
Query: 715 ggcctaggagcctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| || || |||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 592 ggtcttggtgcctcacctaatctcccttcagggtctgatccaatcacattgaaatatct 650
>gb|AW695791.1|AW695791 NF098F03ST1F1029 Developing stem Medicago truncatula cDNA clone
NF098F03ST 5', mRNA sequence
Length = 660
Score = 139 bits (70), Expect = 5e-031
Identities = 185/222 (83%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatc-aatataatctcttatgcaggttcc 611
|||||||| ||||||||||| | |||||| ||||| ||||||||||| |||||| |||||
Sbjct: 558 gctttcacgtgagcatcaaccagatctgttacatccaatataatctcgtatgcaagttcc 499
Query: 612 atcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgc 671
|||| ||| ||| ||||||||| ||||||||||||| ||||| | || || ||
Sbjct: 498 atcacttgtcttatagtctgttcctctaacctttaatccaggaataataccacgagccgc 439
Query: 672 atcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctcacc 731
||||||||| || || ||||| ||||| |||||||| | ||| || || |||||||||||
Sbjct: 438 atcaaagcaggcgccggatattcgaccttgctctcgcaattcaggtcttggagcctcacc 379
Query: 732 taatcttccctcagggtcagatccaataacattgaaatatct 773
|||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 378 caatcttccttcagggtcagatccaatcacattgaagtatct 337
Score = 83.8 bits (42), Expect = 3e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
||||||||||||||||| ||||| ||||| ||||||||||| || || | || |||||
Sbjct: 293 atgatatcctctgccatcttcttggctttaccatatggattaattggaacctgcggtgtt 234
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtact 959
||||||||||||||||||| || ||||| || || || |||||||||||
Sbjct: 233 acttctgtaataggcatcttttcaggttccccatatgttgcacatgtact 184
>gb|AJ497814.1|AJ497814 AJ497814 MTFLOW Medicago truncatula cDNA clone mt--abc955114f11,
mRNA sequence
Length = 307
Score = 137 bits (69), Expect = 2e-030
Identities = 183/221 (82%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | || || |||||||||||||||| |||||| ||||||
Sbjct: 248 gctttcacgtgagcatcaaccagataagttacatcaatataatctcgtatgcaagttcca 189
Query: 613 tcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgca 672
||| ||| ||| ||||||||| ||||||||||||| ||||| | || || |||
Sbjct: 188 tcacttgtcttatagtctgttcctctaacctttaatccaggaataataccacgagccgca 129
Query: 673 tcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctcacct 732
|||||||| || || ||||| ||||| |||||||| | ||| || || |||||||||||
Sbjct: 128 tcaaagcaggcgccggatattcgaccttgctctcgcaattcaggtcttggagcctcaccc 69
Query: 733 aatcttccctcagggtcagatccaataacattgaaatatct 773
|||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 68 aatcttccttcagggtcagatccaatcacattgaagtatct 28
>gb|CX534988.1|CX534988 s13dNF28A09MJ069_388159 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 641
Score = 115 bits (58), Expect = 8e-024
Identities = 142/170 (83%)
Strand = Plus / Plus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| ||||| | |
Sbjct: 375 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctactttacca 434
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
|||| |||||| | || ||||| ||||| |||||||| | ||| || ||||||||||||
Sbjct: 435 ggctttgccttttcaagagctttgacatgggcatcaacaagatcggtaacatcaatataa 494
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacctt 644
|||| ||||| |||||||||| |||| ||||||||||||| |||||||
Sbjct: 495 tctcgaatgcatgttccatcaggtgtgttataatctgttcctgtaacctt 544
>gb|CG937763.1|CG937763 MBECV65TR mth2 Medicago truncatula genomic clone 29K10, DNA
sequence
Length = 648
Score = 113 bits (57), Expect = 3e-023
Identities = 141/169 (83%)
Strand = Plus / Minus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| ||||| | |
Sbjct: 642 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctactttacca 583
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
|||| |||||| | || ||||| ||||| |||||||| | ||| || ||||||||||||
Sbjct: 582 ggctttgccttttcaagagctttgacatgggcatcaacaagatcggtaacatcaatataa 523
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacct 643
|||| ||||| |||||||||| |||| ||||||||||||| ||||||
Sbjct: 522 tctcgaatgcatgttccatcaggtgtgttataatctgttcctgtaacct 474
>gb|CG946601.1|CG946601 MBEEE26TR mth2 Medicago truncatula genomic clone 37E3, DNA sequence
Length = 851
Score = 113 bits (57), Expect = 3e-023
Identities = 141/169 (83%)
Strand = Plus / Minus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| ||||| | |
Sbjct: 679 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctactttacca 620
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
|||| |||||| | || ||||| ||||| |||||||| | ||| || ||||||||||||
Sbjct: 619 ggctttgccttttcaagagctttgacatgggcatcaacaagatcggtaacatcaatataa 560
Query: 595 tctcttatgcaggttccatcagctgtgggataatctgttcctttaacct 643
|||| ||||| |||||||||| |||| ||||||||||||| ||||||
Sbjct: 559 tctcgaatgcatgttccatcaggtgtgttataatctgttcctgtaacct 511
>gb|CG921448.1|CG921448 MBEMN29TR mth2 Medicago truncatula genomic clone 3E10, DNA sequence
Length = 959
Score = 95.6 bits (48), Expect = 7e-018
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
||||||||||| || || ||||| ||||| |||||||| | ||| || || |||||||||
Sbjct: 832 gcatcaaagcaggcgccggatattcgaccttgctctcgcaattcaggtcttggagcctca 891
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| |||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 892 cccaatcttccttcagggtcagatccaatcacattgaagtatct 935
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | |||||| |||||||||||||||| |||||| ||||||
Sbjct: 166 gctttcacgtgagcatcaaccagatctgttacatcaatataatctcgtatgcaagttcca 225
Query: 613 tca 615
|||
Sbjct: 226 tca 228
>gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete sequence
Length = 116075
Score = 95.6 bits (48), Expect = 7e-018
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
||||||||||| || || ||||| ||||| |||||||| | ||| || || |||||||||
Sbjct: 18461 gcatcaaagcaggcgccggatattcgaccttgctctcgcaattcaggtcttggagcctca 18520
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| |||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 18521 cccaatcttccttcagggtcagatccaatcacattgaagtatct 18564
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | |||||| |||||||||||||||| |||||| ||||||
Sbjct: 17795 gctttcacgtgagcatcaaccagatctgttacatcaatataatctcgtatgcaagttcca 17854
Query: 613 tca 615
|||
Sbjct: 17855 tca 17857
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttcttagcttttccatatggatt 890
||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 18774 atgatatcctctgccatcttcttggctttaccatatggatt 18814
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 911 cttctgtaataggcatcttatctggttctccgtaggtagcacatgtact 959
||||||||||||||||||| || ||||| || || || |||||||||||
Sbjct: 18911 cttctgtaataggcatcttttcaggttccccatatgttgcacatgtact 18959
>gb|CG971190.1|CG971190 MBEDU72TRC mth2 Medicago truncatula genomic clone 35K23, DNA
sequence
Length = 932
Score = 91.7 bits (46), Expect = 1e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
||||||||||| || || ||||| ||||| |||||||| | ||| || || |||||||||
Sbjct: 832 gcatcaaagcaggcgccggatattcgaccttgctctcgcaattcaggtcttggagcctca 891
Query: 730 cctaatcttccctcagggtcagatccaataacattgaa 767
|| |||||||| ||||||||||||||||| ||||||||
Sbjct: 892 cccaatcttccttcagggtcagatccaatcacattgaa 929
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | |||||| |||||||||||||||| |||||| ||||||
Sbjct: 166 gctttcacgtgagcatcaaccagatctgttacatcaatataatctcgtatgcaagttcca 225
Query: 613 tca 615
|||
Sbjct: 226 tca 228
>gb|BE943067.1|BE943067 EST422646 MGHG Medicago truncatula cDNA clone pMGHG-14N21, mRNA
sequence
Length = 433
Score = 89.7 bits (45), Expect = 4e-016
Identities = 141/173 (81%)
Strand = Plus / Minus
Query: 601 atgcaggttccatcagctgtgggataatctgttcctttaacctttaatcctggaatgact 660
||||| |||||||||| |||| ||||||||||||| ||||||| || || || || |
Sbjct: 428 atgcatgttccatcaggtgtgttataatctgttcctgtaaccttcaagccaggcataata 369
Query: 661 cctaatgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttctggccta 720
|| |||||||||||||| || || || || |||||||| || ||||| || || ||
Sbjct: 368 ccgcgagctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctcaggtctt 309
Query: 721 ggagcctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
|| |||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 308 ggtgcctcacctaatctcccttcagggtctgatccaatcacattgaaatatct 256
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
|||||||| |||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 212 atgatatcttctgccatcttcttagcttttccatatggattgataggtttctgttctgtt 153
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtactggagtaaat 968
|||||||||| |||||||| || ||||| || || || ||||||||||| || |||||
Sbjct: 152 tcttctgtaattggcatcttttcaggttccccatatgttgcacatgtacttgaataaat 94
>gb|AL381349.1|AL381349 MtBC019E03R1 MtBC Medicago truncatula cDNA clone MtBC019E0 T7, mRNA
sequence
Length = 549
Score = 85.7 bits (43), Expect = 7e-015
Identities = 121/147 (82%)
Strand = Plus / Minus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttttcta 534
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| ||||| | |
Sbjct: 151 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctactttacca 92
Query: 535 ggctctgccttgttgagtgctttcacatgagcatcaactaaatctgtgacatcaatataa 594
|||| ||||| | || ||||| ||||| |||||||| | ||| || ||||||||||||
Sbjct: 91 ggcttggccttttcaagagctttgacatgggcatcaacaagatcggtaacatcaatataa 32
Query: 595 tctcttatgcaggttccatcagctgtg 621
|||| ||||| |||||||||| ||||
Sbjct: 31 tctcgaatgcatgttccatcaggtgtg 5
>gb|BE316206.2|BE316206 NF030F03LF1F1027 Developing leaf Medicago truncatula cDNA clone
NF030F03LF 5', mRNA sequence
Length = 355
Score = 83.8 bits (42), Expect = 3e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
||||||||||||||||| ||||| ||||| ||||||||||| || || | || |||||
Sbjct: 221 atgatatcctctgccatcttcttggctttaccatatggattaattggaacctgcggtgtt 162
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtact 959
||||||||||||||||||| || ||||| || || || |||||||||||
Sbjct: 161 acttctgtaataggcatcttttcaggttccccatatgttgcacatgtact 112
Score = 77.8 bits (39), Expect = 2e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 695 gaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtcagatc 754
|||| |||||||| | ||| || || ||||||||||| |||||||| |||||||||||||
Sbjct: 343 gaccttgctctcgcaattcaggtcttggagcctcacccaatcttccttcagggtcagatc 284
Query: 755 caataacattgaaatatct 773
|||| |||||||| |||||
Sbjct: 283 caatcacattgaagtatct 265
>gb|CG923927.1|CG923927 MBEHQ63TF mth2 Medicago truncatula genomic clone 58K5, DNA sequence
Length = 880
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | |||||| |||||||||||||||| |||||| ||||||
Sbjct: 171 gctttcacgtgagcatcaaccagatctgttacatcaatataatctcgtatgcaagttcca 230
Query: 613 tca 615
|||
Sbjct: 231 tca 233
>gb|CG925142.1|CG925142 MBEND93TF mth2 Medicago truncatula genomic clone 6P18, DNA sequence
Length = 807
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | |||||| |||||||||||||||| |||||| ||||||
Sbjct: 169 gctttcacgtgagcatcaaccagatctgttacatcaatataatctcgtatgcaagttcca 228
Query: 613 tca 615
|||
Sbjct: 229 tca 231
>gb|CG927378.1|CG927378 MBECD24TF mth2 Medicago truncatula genomic clone 24D24, DNA
sequence
Length = 821
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | |||||| |||||||||||||||| |||||| ||||||
Sbjct: 171 gctttcacgtgagcatcaaccagatctgttacatcaatataatctcgtatgcaagttcca 230
Query: 613 tca 615
|||
Sbjct: 231 tca 233
>gb|CG961162.1|CG961162 MBELL07TR mth2 Medicago truncatula genomic clone 80B14, DNA
sequence
Length = 906
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | |||||| |||||||||||||||| |||||| ||||||
Sbjct: 165 gctttcacgtgagcatcaaccagatctgttacatcaatataatctcgtatgcaagttcca 224
Query: 613 tca 615
|||
Sbjct: 225 tca 227
Score = 50.1 bits (25), Expect = 4e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
||||||||||| || || ||||| ||||| |||||||| | ||| || || |||||||||
Sbjct: 831 gcatcaaagcaggcgccggatattcgaccttgctctcgcaattcaggtcttggagcctca 890
Query: 730 cctaatctt 738
|| ||||||
Sbjct: 891 cccaatctt 899
>emb|CR481986.1| mth2-145L11RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 564
Score = 77.8 bits (39), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
|||||||| ||||||||||| | |||||| |||||||||||||||| |||||| ||||||
Sbjct: 170 gctttcacgtgagcatcaaccagatctgttacatcaatataatctcgtatgcaagttcca 229
Query: 613 tca 615
|||
Sbjct: 230 tca 232
>gb|AW774471.1|AW774471 EST333622 KV3 Medicago truncatula cDNA clone pKV3-22N3, mRNA
sequence
Length = 646
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
|||||||| |||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 537 atgatatcttctgccatcttcttagcttttccatatggattgataggtttctgttctgtt 478
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtactggagtaaat 968
|||||||||| |||||||| || ||||| || || || ||||||||||| || |||||
Sbjct: 477 tcttctgtaattggcatcttttcaggttccccatatgttgcacatgtacttgaataaat 419
Score = 61.9 bits (31), Expect = 1e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 724 gcctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
|||||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct: 630 gcctcacctaatctcctntcagggtctgatccaatcacattgaaatatct 581
>gb|BI272466.1|BI272466 NF021H08FL1F1075 Developing flower Medicago truncatula cDNA clone
NF021H08FL 5', mRNA sequence
Length = 713
Score = 77.8 bits (39), Expect = 2e-012
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtg 909
||||||||||||||||| ||||| ||||| ||||||||||| || || | | |||||
Sbjct: 560 atgatatcctctgccatcttcttggctttaccatatggattaattggaacntgcggtgtt 501
Query: 910 gcttctgtaataggcatcttatctggttctccgtaggtagcacatgtact 959
||||||||||||||||||| || ||||| || || || |||||||||||
Sbjct: 500 acttctgtaataggcatcttttcaggttccccatatgttgcacatgtact 451
Score = 63.9 bits (32), Expect = 2e-008
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 700 tgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtcagatccaata 759
|||||||| | ||| || || ||||| ||||| ||||||| |||||||||||||||||
Sbjct: 677 tgctctcgcaattcaggtcttggagcntcacccaatcttcnttcagggtcagatccaatc 618
Query: 760 acattgaaatatct 773
|||||||| |||||
Sbjct: 617 acattgaagtatct 604
>gb|BE942980.1|BE942980 EST422559 MGHG Medicago truncatula cDNA clone pMGHG-14M15, mRNA
sequence
Length = 461
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 852 gatatcctctgccattttcttagcttttccatatggattgatagggaactaaggtgtggc 911
|||||| |||||||| ||||||||||||||||||||||||||||| || ||| |
Sbjct: 461 gatatcttctgccatcttcttagcttttccatatggattgataggtttctgttctgtttc 402
Query: 912 ttctgtaataggcatcttatctggttctccgtaggtagcacatgtactggagtaaat 968
||||||||| |||||||| || ||||| || || || ||||||||||| || |||||
Sbjct: 401 ttctgtaattggcatcttttcaggttccccatatgttgcacatgtacttgaataaat 345
>gb|AW696699.2|AW696699 NF109H05ST1F1047 Developing stem Medicago truncatula cDNA clone
NF109H05ST 5', mRNA sequence
Length = 550
Score = 56.0 bits (28), Expect = 6e-006
Identities = 104/127 (81%), Gaps = 3/127 (2%)
Strand = Plus / Plus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgta--aatgccgacttttc 532
|||||||| |||||||| | |||| |||| || ||||||||||| | |||| ||||| |
Sbjct: 418 acaaactccttaactgacctaccttttccagtgccaacattgtaagattgcctactttac 477
Query: 533 taggctctgccttgttgagtgctttcacatgagcatcaactaa-atctgtgacatcaata 591
||||| |||||| | || ||||| ||||| |||||||| || ||| || |||||||||
Sbjct: 478 caggctttgccttttcaagagctttgacatgggcatcaacaaagatcggtaacatcaata 537
Query: 592 taatctc 598
|||||||
Sbjct: 538 taatctc 544
>gb|CX527137.1|CX527137 s13dNF40D04AT042_514786 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 617
Score = 50.1 bits (25), Expect = 4e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 911 cttctgtaataggcatcttatctggttctccgtaggtagcacatgtact 959
||||||||||||||||||| || ||||| || || || |||||||||||
Sbjct: 609 cttctgtaataggcatcttttcaggttccccatatgttgcacatgtact 561
>gb|AL386203.1|AL386203 MtBC33B12F1 MtBC Medicago truncatula cDNA clone MtBC33B12 T3, mRNA
sequence
Length = 497
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttt 530
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| |||||
Sbjct: 428 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctacttt 483
>gb|BG453426.1|BG453426 NF096D10LF1F1079 Developing leaf Medicago truncatula cDNA clone
NF096D10LF 5', mRNA sequence
Length = 458
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 475 acaaactcattaactgagcgacctcttcctgttccaacattgtaaatgccgacttt 530
|||||||| |||||||| | |||| |||| || ||||||||||| ||||| |||||
Sbjct: 63 acaaactccttaactgacctaccttttccagtgccaacattgtagatgcctacttt 8
>gb|CA917136.1|CA917136 EST641283 GPOD Medicago truncatula cDNA clone GPOD-35A24, mRNA
sequence
Length = 779
Score = 46.1 bits (23), Expect = 0.006
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 667 gctgcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcc 726
|||||||||||||| || || || || |||||||| || ||||| || || || || |||
Sbjct: 72 gctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctcaggtcttggtgcc 13
Query: 727 tcacctaatct 737
|||||||||||
Sbjct: 12 tcacctaatct 2
>gb|CG936944.1|CG936944 MBECC74TR mth2 Medicago truncatula genomic clone 24N3, DNA sequence
Length = 892
Score = 42.1 bits (21), Expect = 0.090
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 121 aaaaatgcaaacttttgaaataaaa 145
||||| |||||||||||||||||||
Sbjct: 577 aaaaacgcaaacttttgaaataaaa 553
>gb|AL377539.1|AL377539 MtBB32C08F1 MtBB Medicago truncatula cDNA clone MtBB32C08 T3, mRNA
sequence
Length = 477
Score = 42.1 bits (21), Expect = 0.090
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 442 atgttgaccccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctctt 501
||||| |||||||| ||||| || || || ||||||||||| || ||||| | ||| ||
Sbjct: 117 atgttcaccccagtagcctttttacaagcttcaacaaactccttcactgaactacccttt 58
Query: 502 cctgttccaacattgta 518
|| || |||||||||||
Sbjct: 57 ccagtgccaacattgta 41
>gb|BI271915.1|BI271915 NF016C03FL1F1021 Developing flower Medicago truncatula cDNA clone
NF016C03FL 5', mRNA sequence
Length = 364
Score = 42.1 bits (21), Expect = 0.090
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 915 tgtaataggcatcttatctggttctccgtaggtagcacatgtact 959
||||||||||||||| || ||||| || || || |||||||||||
Sbjct: 364 tgtaataggcatcttttcaggttccccatatgttgcacatgtact 320
>gb|AC146708.18| Medicago truncatula clone mth2-80a22, WORKING DRAFT SEQUENCE, 6 ordered
pieces
Length = 126423
Score = 42.1 bits (21), Expect = 0.090
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 121 aaaaatgcaaacttttgaaataaaa 145
||||| |||||||||||||||||||
Sbjct: 85832 aaaaacgcaaacttttgaaataaaa 85856
>emb|CR331519.1| mte1-60N17FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 424 gagagaaagaagaatacgaa 443
>emb|CR317109.1| mte1-41O20RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 422 gagagaaagaagaatacgaa 441
>gb|AC147002.20| Medicago truncatula clone mth2-151m16, complete sequence
Length = 128621
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 119078 gagagaaagaagaatacgaa 119097
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 103976 gagagaaagaagaatacgaa 103995
>gb|AC139343.22| Medicago truncatula clone mth2-32l12, WORKING DRAFT SEQUENCE, 5
ordered pieces
Length = 102342
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 7726 gagagaaagaagaatacgaa 7707
>gb|AC160242.7| Medicago truncatula clone mth2-65g16, WORKING DRAFT SEQUENCE, 23
unordered pieces
Length = 155209
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 82444 gagagaaagaagaatacgaa 82463
>gb|AC170084.6| Medicago truncatula clone mth2-156k10, WORKING DRAFT SEQUENCE, 37
unordered pieces
Length = 192279
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 115572 gagagaaagaagaatacgaa 115591
>gb|AC157778.9| Medicago truncatula clone mth2-155p7, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 77489
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 29596 gagagaaagaagaatacgaa 29615
>gb|AC150844.30| Medicago truncatula clone mth2-104a5, WORKING DRAFT SEQUENCE, 7 ordered
pieces
Length = 137420
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 151 gagagaaagaagaatacgaa 170
||||||||||||||||||||
Sbjct: 63955 gagagaaagaagaatacgaa 63974
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 303,743
Number of Sequences: 392609
Number of extensions: 303743
Number of successful extensions: 23235
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23073
Number of HSP's gapped (non-prelim): 155
length of query: 1016
length of database: 441,732,993
effective HSP length: 20
effective length of query: 996
effective length of database: 433,880,813
effective search space: 432145289748
effective search space used: 432145289748
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)