BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3071667.2.1
         (597 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW287870.2|AW287870  N100714e rootphos(-) Medicago trunca...    40   0.21 
gb|BE239808.1|BE239808  EST403857 MHRP- Medicago truncatula ...    40   0.21 
gb|AL386143.1|AL386143  MtBC32G10F1 MtBC Medicago truncatula...    40   0.21 
gb|AL386144.1|AL386144  MtBC32G10R1 MtBC Medicago truncatula...    40   0.21 
gb|AL386704.1|AL386704  MtBC36D01R1 MtBC Medicago truncatula...    40   0.21 

>gb|AW287870.2|AW287870 N100714e rootphos(-) Medicago truncatula cDNA clone MHRP-10E1, mRNA
           sequence
          Length = 506

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 559 gtcttgaacttcatgagggacatgacggggcc 590
           ||||||||||||||||| | |||||| |||||
Sbjct: 108 gtcttgaacttcatgagtgccatgacagggcc 77



>gb|BE239808.1|BE239808 EST403857 MHRP- Medicago truncatula cDNA clone pMHRP-38M20, mRNA
           sequence
          Length = 567

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 559 gtcttgaacttcatgagggacatgacggggcc 590
           ||||||||||||||||| | |||||| |||||
Sbjct: 380 gtcttgaacttcatgagtgccatgacagggcc 349



>gb|AL386143.1|AL386143 MtBC32G10F1 MtBC Medicago truncatula cDNA clone MtBC32G10 T3, mRNA
           sequence
          Length = 478

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 559 gtcttgaacttcatgagggacatgacggggcc 590
           ||||||||||||||||| | |||||| |||||
Sbjct: 278 gtcttgaacttcatgagtgccatgacagggcc 247



>gb|AL386144.1|AL386144 MtBC32G10R1 MtBC Medicago truncatula cDNA clone MtBC32G10 T7, mRNA
           sequence
          Length = 481

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 559 gtcttgaacttcatgagggacatgacggggcc 590
           ||||||||||||||||| | |||||| |||||
Sbjct: 76  gtcttgaacttcatgagtgccatgacagggcc 45



>gb|AL386704.1|AL386704 MtBC36D01R1 MtBC Medicago truncatula cDNA clone MtBC36D01 T7, mRNA
           sequence
          Length = 522

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 559 gtcttgaacttcatgagggacatgacggggcc 590
           ||||||||||||||||| | |||||| |||||
Sbjct: 118 gtcttgaacttcatgagtgccatgacagggcc 87



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,173
Number of Sequences: 392609
Number of extensions: 94173
Number of successful extensions: 6219
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6214
Number of HSP's gapped (non-prelim): 5
length of query: 597
length of database: 441,732,993
effective HSP length: 19
effective length of query: 578
effective length of database: 434,273,422
effective search space: 251010037916
effective search space used: 251010037916
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)