BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3070863.2.1
         (992 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DW015953.1|DW015953  EST1224914 MTY Medicago truncatula c...    46   0.006
gb|AC139882.29|  Medicago truncatula clone mth2-32f21, compl...    40   0.35 
gb|AC148818.10|  Medicago truncatula clone mth2-39d7, WORKIN...    40   0.35 

>gb|DW015953.1|DW015953 EST1224914 MTY Medicago truncatula cDNA clone MTYAB58, mRNA
           sequence
          Length = 600

 Score = 46.1 bits (23), Expect = 0.006
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 326 ttgtctccaatgctgccgcaaatccttctgt 356
           |||| ||||||||||| ||||||||||||||
Sbjct: 382 ttgtgtccaatgctgctgcaaatccttctgt 412



>gb|AC139882.29| Medicago truncatula clone mth2-32f21, complete sequence
          Length = 115770

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   gggatattaacgtcaaggct 420
             ||||||||||||||||||||
Sbjct: 13063 gggatattaacgtcaaggct 13044



>gb|AC148818.10| Medicago truncatula clone mth2-39d7, WORKING DRAFT SEQUENCE, 7
            unordered pieces
          Length = 148977

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  gggatattaacgtcaaggct 420
            ||||||||||||||||||||
Sbjct: 9166 gggatattaacgtcaaggct 9147



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 214,212
Number of Sequences: 392609
Number of extensions: 214212
Number of successful extensions: 15857
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15848
Number of HSP's gapped (non-prelim): 9
length of query: 992
length of database: 441,732,993
effective HSP length: 20
effective length of query: 972
effective length of database: 433,880,813
effective search space: 421732150236
effective search space used: 421732150236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)