BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM779973.1|BM779973 EST590549 KV2 Medicago truncatula cD... 121 1e-025
gb|AJ500850.1|AJ500850 AJ500850 MTGIM Medicago truncatula c... 111 1e-022
gb|BG644335.1|BG644335 EST505954 KV3 Medicago truncatula cD... 96 6e-018
gb|AC146651.10| Medicago truncatula clone mth2-113d3, compl... 72 9e-011
gb|AC140913.25| Medicago truncatula clone mth2-26h9, comple... 50 3e-004
emb|CR333041.1| mte1-62B10RM1 BAC end, cultivar Jemalong A1... 48 0.001
gb|AC148655.4| Medicago truncatula clone mth2-61c11, comple... 48 0.001
gb|AC150980.20| Medicago truncatula clone mth2-165j9, compl... 48 0.001
gb|BG449580.1|BG449580 NF054D02IN1F1016 Insect herbivory Me... 44 0.020
gb|BF632692.1|BF632692 NF039A11DT1F1082 Drought Medicago tr... 42 0.079
emb|CR337399.1| mte1-68J12RM1 BAC end, cultivar Jemalong A1... 40 0.31
emb|CR345669.1| mte1-79D10FM1 BAC end, cultivar Jemalong A1... 40 0.31
gb|AW691084.1|AW691084 NF041A11ST1F1000 Developing stem Med... 40 0.31
gb|BG649079.1|BG649079 EST510698 HOGA Medicago truncatula c... 40 0.31
gb|AC126782.23| Medicago truncatula clone mth2-14p11, compl... 40 0.31
emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2... 40 0.31
>gb|BM779973.1|BM779973 EST590549 KV2 Medicago truncatula cDNA clone pKV2-53H15, mRNA
sequence
Length = 871
Score = 121 bits (61), Expect = 1e-025
Identities = 244/305 (80%)
Strand = Plus / Minus
Query: 93 actgagtgcaaaacaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgc 152
||||||||||| || || ||||| |||||||| || ||||| || | ||||| |||||
Sbjct: 825 actgagtgcaacactacattttttaatatttcagcatcgtctatgttcagcaaatggcga 766
Query: 153 ggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatct 212
||||| || ||||| |||| || |||||||| || |||||||||||||| || || |
Sbjct: 765 ggtgattcagagaagttagtaaaggtgttatttgagcttgcaaggcatcacgcgcccgca 706
Query: 213 actattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcgtagtgaa 272
|| || || ||||| || |||||||| |||||||||||||||||||| | || ||||||
Sbjct: 705 acaatatttcttgacgaaattgatgcaatcattagtcaacgtggtgaggggcgcagtgaa 646
Query: 273 catgaagctagccggcgattgaaaactgagctattaatacagatggatgggttgactaag 332
|||||||| || | || || |||||||| ||| | || ||||||||||| || | |
Sbjct: 645 catgaagcaagtagacggttaaaaactgaactactcattcagatggatggtttagcacgg 586
Query: 333 acagatgagcttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagca 392
|| ||||| |||||||||||| | || ||||||||| | || ||||| |||||||||||
Sbjct: 585 acggatgaacttgtttttgttttggcggcaacaaatcttccctgggaattggatgcagcc 526
Query: 393 atgct 397
|||||
Sbjct: 525 atgct 521
>gb|AJ500850.1|AJ500850 AJ500850 MTGIM Medicago truncatula cDNA clone mtgmacc120020h04,
mRNA sequence
Length = 309
Score = 111 bits (56), Expect = 1e-022
Identities = 203/252 (80%)
Strand = Plus / Plus
Query: 146 gtggcgcggtgactcggagaaactagtgaaagtgttattcgaacttgcaaggcatcatgc 205
|||||| ||||| || ||||| |||| || |||||||| || |||||||||||||| ||
Sbjct: 10 gtggcgaggtgattcagagaagttagtaaaggtgttatttgagcttgcaaggcatcacgc 69
Query: 206 accatctactattttccttgatgagattgatgctatcattagtcaacgtggtgaagctcg 265
|| | || || || ||||| || |||||||| |||||||||||||||||||| | ||
Sbjct: 70 gcccgcaacaatatttcttgacgaaattgatgcaatcattagtcaacgtggtgaggggcg 129
Query: 266 tagtgaacatgaagctagccggcgattgaaaactgagctattaatacagatggatgggtt 325
|||||||||||||| || | || || |||||||| ||| | || ||||||||||| ||
Sbjct: 130 cagtgaacatgaagcaagtagacggttaaaaactgaactactcattcagatggatggttt 189
Query: 326 gactaagacagatgagcttgtttttgttctagcagcaacaaatttaccatgggagttgga 385
| | ||| ||||| |||||||||||| | || ||||||||| | || ||||| |||||
Sbjct: 190 ggcacggacggatgaacttgtttttgttttggcggcaacaaatcttccctgggaattgga 249
Query: 386 tgcagcaatgct 397
|||||| |||||
Sbjct: 250 tgcagccatgct 261
>gb|BG644335.1|BG644335 EST505954 KV3 Medicago truncatula cDNA clone pKV3-37A7 5' end, mRNA
sequence
Length = 566
Score = 95.6 bits (48), Expect = 6e-018
Identities = 188/232 (81%), Gaps = 2/232 (0%)
Strand = Plus / Minus
Query: 195 aggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaacgt 254
|||||||||||||| || || || || || ||||| |||||||| || || |||||||||
Sbjct: 563 aggcatcatgcaccttcaaccatctttctcgatgaaattgatgccattatcagtcaacgt 504
Query: 255 ggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagc-tattaataca 313
|| ||||| || ||||| |||||| |||| |||| || ||||| |||| | | |||||
Sbjct: 503 ggggaagcgcgcagtgagcatgaatctagtaggcgtttaaaaacagagcttgctcataca 444
Query: 314 gatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaat-ttac 372
|||||| || |||| | ||||||||| ||||| |||||||| || ||||||||| || |
Sbjct: 443 gatggacggtttgaatcggacagatgaacttgtctttgttctggcggcaacaaatctttc 384
Query: 373 catgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
| ||||| |||||||||||||||| || || || |||||||| || |||||
Sbjct: 383 cctgggaactggatgcagcaatgctccgacgtcttgagaagcggatccttgt 332
>gb|AC146651.10| Medicago truncatula clone mth2-113d3, complete sequence
Length = 157296
Score = 71.9 bits (36), Expect = 9e-011
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 177 gtgttattcgaacttgcaaggcatcatgcaccatctactattttccttgatgagattgat 236
|||||||| || |||||||||||||| || || | || || || ||||| || ||||||
Sbjct: 47110 gtgttatttgagcttgcaaggcatcacgcgcccgcaacaatatttcttgacgaaattgat 47051
Query: 237 gctatcattagtcaacgtggtgaagctcgtagtgaacatgaagc 280
|| |||||||||||||||||||| | || ||||||||||||||
Sbjct: 47050 gcaatcattagtcaacgtggtgaggggcgcagtgaacatgaagc 47007
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 336 gatgagcttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatg 395
||||| |||||||||||| | || ||||||||| | || ||||| ||||||||||| |||
Sbjct: 45961 gatgaacttgtttttgttttggcggcaacaaatcttccctgggaattggatgcagccatg 45902
Query: 396 ct 397
||
Sbjct: 45901 ct 45900
Score = 50.1 bits (25), Expect = 3e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 67 agacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatttctg 126
|||||||||| || || || || || ||||||||||| || || ||||| |||||||| |
Sbjct: 48224 agacaatgcttgcaaaggcagttgcaactgagtgcaacactacattttttaatatttcag 48165
Query: 127 cctcgtcgattgtaagcaagtggcg 151
| ||||| ||||| ||||| |||||
Sbjct: 48164 catcgtctattgtcagcaaatggcg 48140
>gb|AC140913.25| Medicago truncatula clone mth2-26h9, complete sequence
Length = 124828
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 36 atattactgtttggtccacctggaacaggaaagacaatgct 76
||||| || ||||| ||||||||||||||||| ||||||||
Sbjct: 70824 atattgctatttgggccacctggaacaggaaaaacaatgct 70864
>emb|CR333041.1| mte1-62B10RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 537
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 36 atattactgtttggtccacctggaacaggaaagacaatgctagc 79
|||||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 266 atattacttttcggtccacctggtaccggaaaaacaatgctagc 223
>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence
Length = 89884
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 37 tattactgtttggtccacctggaacaggaaagacaatgct 76
||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 87668 tattactttttggacctcctggtacaggaaagacaatgct 87629
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 45 tttggtccacctggaacaggaaagacaatgct 76
||||| || ||||| |||||||||||||||||
Sbjct: 79220 tttggacctcctggtacaggaaagacaatgct 79189
>gb|AC150980.20| Medicago truncatula clone mth2-165j9, complete sequence
Length = 119548
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 37 tattactgtttggtccacctggaacaggaaagacaatgct 76
||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 117193 tattactttttggacctcctggtacaggaaagacaatgct 117232
>gb|BG449580.1|BG449580 NF054D02IN1F1016 Insect herbivory Medicago truncatula cDNA clone
NF054D02IN 5', mRNA sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.020
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 63 ggaaagacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatt 122
|||||||||||||| || || || || || ||||||||||| || || ||||| ||||||
Sbjct: 604 ggaaagacaatgcttgcaaaggcagttgcaactgagtgcaacactacattttttaatatt 663
Query: 123 tc 124
||
Sbjct: 664 tc 665
>gb|BF632692.1|BF632692 NF039A11DT1F1082 Drought Medicago truncatula cDNA clone NF039A11DT
5', mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.079
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 63 ggaaagacaatgctagctaaagctgtggctactgagtgcaaaacaacttttttcaatatt 122
|||||||||||||| || || || || || ||||||||||| || || ||||| ||||||
Sbjct: 492 ggaaagacaatgcttgcaaaggcagttgcaactgagtgcaacactacattttttaatatt 551
Query: 123 t 123
|
Sbjct: 552 t 552
>emb|CR337399.1| mte1-68J12RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 480
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 45 tttggtccacctggaacaggaaagacaatgct 76
|||||||| || |||||||| |||||||||||
Sbjct: 432 tttggtcccccaggaacaggtaagacaatgct 401
>emb|CR345669.1| mte1-79D10FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 45 tttggtccacctggaacaggaaagacaatgct 76
|||||||| || |||||||| |||||||||||
Sbjct: 448 tttggtcccccaggaacaggtaagacaatgct 417
>gb|AW691084.1|AW691084 NF041A11ST1F1000 Developing stem Medicago truncatula cDNA clone
NF041A11ST 5', mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgct 76
||||| || ||||| |||||||||||||||||
Sbjct: 566 tttggacctcctggtacaggaaagacaatgct 597
>gb|BG649079.1|BG649079 EST510698 HOGA Medicago truncatula cDNA clone pHOGA-24F12 5' end,
mRNA sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgct 76
||||| || ||||| |||||||||||||||||
Sbjct: 216 tttggacctcctggtacaggaaagacaatgct 247
>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence
Length = 135659
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 45 tttggtccacctggaacaggaaagacaatgct 76
|||||||| || |||||||| |||||||||||
Sbjct: 89284 tttggtcccccaggaacaggtaagacaatgct 89253
>emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE
Length = 114811
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 222 cttgatgagattgatgctat 241
||||||||||||||||||||
Sbjct: 34121 cttgatgagattgatgctat 34102
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 235,910
Number of Sequences: 392609
Number of extensions: 235910
Number of successful extensions: 17027
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16962
Number of HSP's gapped (non-prelim): 59
length of query: 893
length of database: 441,732,993
effective HSP length: 20
effective length of query: 873
effective length of database: 433,880,813
effective search space: 378777949749
effective search space used: 378777949749
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)