BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3064721.2.2
         (595 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CB892201.1|CB892201  EST649170 KV3 Medicago truncatula cD...    44   0.013
gb|AC155898.15|  Medicago truncatula clone mth2-109f1, compl...    40   0.21 
gb|AC158737.14|  Medicago truncatula clone mth2-154f20, comp...    40   0.21 
>gb|CB892201.1|CB892201 EST649170 KV3 Medicago truncatula cDNA clone KV3-53D13, mRNA
           sequence
          Length = 822

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 9   tttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacctggcagaag 68
           |||||||| | ||| ||||  |||||||||||||| ||||| ||||| |  |||||||||
Sbjct: 514 tttgatttagtcgaatggaagaagcaaaacatcacagaggtgtaccacaattggcagaag 455

                 
Query: 69  ttgaat 74
            |||||
Sbjct: 454 ctgaat 449
>gb|AC155898.15| Medicago truncatula clone mth2-109f1, complete sequence
          Length = 93173

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 9     tttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacctggcagaag 68
             |||||||| | ||| ||||  |||||||||||||| ||||| ||||| |  |||||||||
Sbjct: 45184 tttgatttagtcgaatggaagaagcaaaacatcacagaggtgtaccacaattggcagaag 45243
>gb|AC158737.14| Medicago truncatula clone mth2-154f20, complete sequence
          Length = 114538

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                        
Query: 9    tttgatttgggcgactggagaaagcaaaacatcactgaggtctaccatacctggcagaag 68
            |||||||| | ||| ||||  |||||||||||||| ||||| ||||| |  |||||||||
Sbjct: 986  tttgatttagtcgaatggaagaagcaaaacatcacagaggtgtaccacaattggcagaag 1045
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 165,500
Number of Sequences: 392609
Number of extensions: 165500
Number of successful extensions: 12044
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12030
Number of HSP's gapped (non-prelim): 14
length of query: 595
length of database: 441,732,993
effective HSP length: 19
effective length of query: 576
effective length of database: 434,273,422
effective search space: 250141491072
effective search space used: 250141491072
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)