BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950160.2.1
         (846 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CG939602.1|CG939602  MBELA01TF mth2 Medicago truncatula g...    72   8e-011
gb|BG581102.1|BG581102  EST482832 GVN Medicago truncatula cD...    72   8e-011
gb|AC173290.1|  Medicago truncatula chromosome 2 clone mth2-...    62   8e-008
gb|BF650423.1|BF650423  NF088D03EC1F1028 Elicited cell cultu...    48   0.001
gb|BI309958.1|BI309958  EST5311708 GESD Medicago truncatula ...    46   0.005
gb|AC147014.24|  Medicago truncatula clone mth2-164l15, WORK...    46   0.005
emb|CR341503.1|  mte1-73J4RM1 BAC end, cultivar Jemalong A17...    42   0.075
gb|AL377155.1|AL377155  MtBB29G01R1 MtBB Medicago truncatula...    42   0.075
gb|BI272689.1|BI272689  NF024D06FL1F1057 Developing flower M...    42   0.075
gb|BQ146070.1|BQ146070  NF010A12GS1F1088 Germinating Seed Me...    42   0.075
gb|CA990579.1|CA990579  EST644087 GESD Medicago truncatula c...    42   0.075
gb|CX537219.1|CX537219  s13dNF10A12GS088_457644 Germinating ...    42   0.075
gb|CX537716.1|CX537716  s13dNF35D08GS062_458664 Germinating ...    42   0.075
gb|CX538323.1|CX538323  s13dNF80A11GS081_459898 Germinating ...    42   0.075
gb|CX540878.1|CX540878  s13dNF05B03GS029_465036 Germinating ...    42   0.075
gb|AC161399.2|  Medicago truncatula chromosome 2 BAC clone m...    42   0.075
gb|AC174296.3|  Medicago truncatula clone mth2-72l21, WORKIN...    42   0.075
gb|CG921442.1|CG921442  MBEFI44TR mth2 Medicago truncatula g...    40   0.30 
emb|CR326371.1|  mte1-54D15RM1 BAC end, cultivar Jemalong A1...    40   0.30 
>gb|CG939602.1|CG939602 MBELA01TF mth2 Medicago truncatula genomic clone 78A1, DNA sequence
          Length = 914

 Score = 71.9 bits (36), Expect = 8e-011
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 765 tcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagc 824
           ||||||||||| || || ||||| || |||||||| |||||||||||||||| |||||  
Sbjct: 761 tcctgccaatagtggtagatgccagttacattctttttcctccattcaaccaaatcaaat 702

                               
Query: 825 acgttcataccaaatgccca 844
           || ||||| |||||||||||
Sbjct: 701 acattcatcccaaatgccca 682
>gb|BG581102.1|BG581102 EST482832 GVN Medicago truncatula cDNA clone pGVN-63F8 5' end, mRNA
           sequence
          Length = 593

 Score = 71.9 bits (36), Expect = 8e-011
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 765 tcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagc 824
           ||||||||||| || || ||||| || |||||||| |||||||||||||||| |||||  
Sbjct: 278 tcctgccaatagtggtagatgccagttacattctttttcctccattcaaccaaatcaaat 219

                               
Query: 825 acgttcataccaaatgccca 844
           || ||||| |||||||||||
Sbjct: 218 acattcatcccaaatgccca 199
>gb|AC173290.1| Medicago truncatula chromosome 2 clone mth2-45a9, *** SEQUENCING IN
              PROGRESS ***, 7 unordered pieces
          Length = 125396

 Score = 61.9 bits (31), Expect = 8e-008
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                          
Query: 766    cctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagca 825
              ||||||||||||| || ||||| || ||||| || |||||||| ||||||| |||||  |
Sbjct: 105681 cctgccaataatggtagatgccggttacattatttttcctccactcaaccaaatcaaata 105740

                                 
Query: 826    cgttcataccaaatgccca 844
              | ||||| |||||||||||
Sbjct: 105741 cattcatcccaaatgccca 105759

 Score = 61.9 bits (31), Expect = 8e-008
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                         
Query: 766   cctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagca 825
             ||||||||||||| || ||||| || ||||| || |||||||| ||||||| |||||  |
Sbjct: 46667 cctgccaataatggtagatgccggttacattatttttcctccactcaaccaaatcaaata 46726

                                
Query: 826   cgttcataccaaatgccca 844
             | ||||| |||||||||||
Sbjct: 46727 cattcatcccaaatgccca 46745
>gb|BF650423.1|BF650423 NF088D03EC1F1028 Elicited cell culture Medicago truncatula cDNA
           clone NF088D03EC 5', mRNA sequence
          Length = 645

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 652 tagccaagtcccaaaacatgccat 675
           ||||||||||||||||||||||||
Sbjct: 320 tagccaagtcccaaaacatgccat 297
>gb|BI309958.1|BI309958 EST5311708 GESD Medicago truncatula cDNA clone pGESD4L15 5' end,
           mRNA sequence
          Length = 731

 Score = 46.1 bits (23), Expect = 0.005
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 582 ccatggcttcatatttccattgtagtg 608
           ||||||||||||||| |||||||||||
Sbjct: 511 ccatggcttcatattaccattgtagtg 485
>gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORKING DRAFT SEQUENCE
          Length = 127679

 Score = 46.1 bits (23), Expect = 0.005
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 582   ccatggcttcatatttccattgtagtg 608
             ||||||||||||||| |||||||||||
Sbjct: 86632 ccatggcttcatattaccattgtagtg 86658
>emb|CR341503.1| mte1-73J4RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 471

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 580 agccatggcttcatatttccattgtagtg 608
           ||||| ||||||||||| |||||||||||
Sbjct: 278 agccacggcttcatattaccattgtagtg 306
>gb|AL377155.1|AL377155 MtBB29G01R1 MtBB Medicago truncatula cDNA clone MtBB29G01 T7, mRNA
           sequence
          Length = 527

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 655 ccaagtcccaaaacatgccat 675
           |||||||||||||||||||||
Sbjct: 129 ccaagtcccaaaacatgccat 109
>gb|BI272689.1|BI272689 NF024D06FL1F1057 Developing flower Medicago truncatula cDNA clone
           NF024D06FL 5', mRNA sequence
          Length = 724

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 655 ccaagtcccaaaacatgccat 675
           |||||||||||||||||||||
Sbjct: 322 ccaagtcccaaaacatgccat 302
>gb|BQ146070.1|BQ146070 NF010A12GS1F1088 Germinating Seed Medicago truncatula cDNA clone
           NF010A12GS 5', mRNA sequence
          Length = 527

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 580 agccatggcttcatatttccattgtagtg 608
           ||||| ||||||||||| |||||||||||
Sbjct: 53  agccacggcttcatattaccattgtagtg 25
>gb|CA990579.1|CA990579 EST644087 GESD Medicago truncatula cDNA clone GESD-29M9, mRNA
           sequence
          Length = 679

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 655 ccaagtcccaaaacatgccat 675
           |||||||||||||||||||||
Sbjct: 435 ccaagtcccaaaacatgccat 415
>gb|CX537219.1|CX537219 s13dNF10A12GS088_457644 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 492

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 580 agccatggcttcatatttccattgtagtg 608
           ||||| ||||||||||| |||||||||||
Sbjct: 46  agccacggcttcatattaccattgtagtg 18
>gb|CX537716.1|CX537716 s13dNF35D08GS062_458664 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 201

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 580 agccatggcttcatatttccattgtagtg 608
           ||||| ||||||||||| |||||||||||
Sbjct: 46  agccacggcttcatattaccattgtagtg 18
>gb|CX538323.1|CX538323 s13dNF80A11GS081_459898 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 661

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 655 ccaagtcccaaaacatgccat 675
           |||||||||||||||||||||
Sbjct: 585 ccaagtcccaaaacatgccat 565
>gb|CX540878.1|CX540878 s13dNF05B03GS029_465036 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 492

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 580 agccatggcttcatatttccattgtagtg 608
           ||||| ||||||||||| |||||||||||
Sbjct: 46  agccacggcttcatattaccattgtagtg 18
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
          Length = 172016

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 582   ccatggcttcatatttccattgtagtgca 610
             |||||||||||| || |||||||||||||
Sbjct: 52118 ccatggcttcatgttcccattgtagtgca 52146
>gb|AC174296.3| Medicago truncatula clone mth2-72l21, WORKING DRAFT SEQUENCE, 9
             unordered pieces
          Length = 114521

 Score = 42.1 bits (21), Expect = 0.075
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 655   ccaagtcccaaaacatgccat 675
             |||||||||||||||||||||
Sbjct: 51193 ccaagtcccaaaacatgccat 51173
>gb|CG921442.1|CG921442 MBEFI44TR mth2 Medicago truncatula genomic clone 44G15, DNA
           sequence
          Length = 776

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 579 gagccatggcttcatatttccatt 602
           ||||||||| ||||||||||||||
Sbjct: 732 gagccatggtttcatatttccatt 709
>emb|CR326371.1| mte1-54D15RM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 654

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 574 attttgagccatggcttcat 593
           ||||||||||||||||||||
Sbjct: 424 attttgagccatggcttcat 443
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 271,918
Number of Sequences: 392609
Number of extensions: 271918
Number of successful extensions: 21483
Number of sequences better than  0.5: 19
Number of HSP's better than  0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21428
Number of HSP's gapped (non-prelim): 55
length of query: 846
length of database: 441,732,993
effective HSP length: 20
effective length of query: 826
effective length of database: 433,880,813
effective search space: 358385551538
effective search space used: 358385551538
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)