BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG939602.1|CG939602 MBELA01TF mth2 Medicago truncatula g... 72 8e-011
gb|BG581102.1|BG581102 EST482832 GVN Medicago truncatula cD... 72 8e-011
gb|AC173290.1| Medicago truncatula chromosome 2 clone mth2-... 62 8e-008
gb|BF650423.1|BF650423 NF088D03EC1F1028 Elicited cell cultu... 48 0.001
gb|BI309958.1|BI309958 EST5311708 GESD Medicago truncatula ... 46 0.005
gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORK... 46 0.005
emb|CR341503.1| mte1-73J4RM1 BAC end, cultivar Jemalong A17... 42 0.075
gb|AL377155.1|AL377155 MtBB29G01R1 MtBB Medicago truncatula... 42 0.075
gb|BI272689.1|BI272689 NF024D06FL1F1057 Developing flower M... 42 0.075
gb|BQ146070.1|BQ146070 NF010A12GS1F1088 Germinating Seed Me... 42 0.075
gb|CA990579.1|CA990579 EST644087 GESD Medicago truncatula c... 42 0.075
gb|CX537219.1|CX537219 s13dNF10A12GS088_457644 Germinating ... 42 0.075
gb|CX537716.1|CX537716 s13dNF35D08GS062_458664 Germinating ... 42 0.075
gb|CX538323.1|CX538323 s13dNF80A11GS081_459898 Germinating ... 42 0.075
gb|CX540878.1|CX540878 s13dNF05B03GS029_465036 Germinating ... 42 0.075
gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone m... 42 0.075
gb|AC174296.3| Medicago truncatula clone mth2-72l21, WORKIN... 42 0.075
gb|CG921442.1|CG921442 MBEFI44TR mth2 Medicago truncatula g... 40 0.30
emb|CR326371.1| mte1-54D15RM1 BAC end, cultivar Jemalong A1... 40 0.30
>gb|CG939602.1|CG939602 MBELA01TF mth2 Medicago truncatula genomic clone 78A1, DNA sequence
Length = 914
Score = 71.9 bits (36), Expect = 8e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 765 tcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagc 824
||||||||||| || || ||||| || |||||||| |||||||||||||||| |||||
Sbjct: 761 tcctgccaatagtggtagatgccagttacattctttttcctccattcaaccaaatcaaat 702
Query: 825 acgttcataccaaatgccca 844
|| ||||| |||||||||||
Sbjct: 701 acattcatcccaaatgccca 682
>gb|BG581102.1|BG581102 EST482832 GVN Medicago truncatula cDNA clone pGVN-63F8 5' end, mRNA
sequence
Length = 593
Score = 71.9 bits (36), Expect = 8e-011
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 765 tcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagc 824
||||||||||| || || ||||| || |||||||| |||||||||||||||| |||||
Sbjct: 278 tcctgccaatagtggtagatgccagttacattctttttcctccattcaaccaaatcaaat 219
Query: 825 acgttcataccaaatgccca 844
|| ||||| |||||||||||
Sbjct: 218 acattcatcccaaatgccca 199
>gb|AC173290.1| Medicago truncatula chromosome 2 clone mth2-45a9, *** SEQUENCING IN
PROGRESS ***, 7 unordered pieces
Length = 125396
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 766 cctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagca 825
||||||||||||| || ||||| || ||||| || |||||||| ||||||| ||||| |
Sbjct: 105681 cctgccaataatggtagatgccggttacattatttttcctccactcaaccaaatcaaata 105740
Query: 826 cgttcataccaaatgccca 844
| ||||| |||||||||||
Sbjct: 105741 cattcatcccaaatgccca 105759
Score = 61.9 bits (31), Expect = 8e-008
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 766 cctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagca 825
||||||||||||| || ||||| || ||||| || |||||||| ||||||| ||||| |
Sbjct: 46667 cctgccaataatggtagatgccggttacattatttttcctccactcaaccaaatcaaata 46726
Query: 826 cgttcataccaaatgccca 844
| ||||| |||||||||||
Sbjct: 46727 cattcatcccaaatgccca 46745
>gb|BF650423.1|BF650423 NF088D03EC1F1028 Elicited cell culture Medicago truncatula cDNA
clone NF088D03EC 5', mRNA sequence
Length = 645
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 652 tagccaagtcccaaaacatgccat 675
||||||||||||||||||||||||
Sbjct: 320 tagccaagtcccaaaacatgccat 297
>gb|BI309958.1|BI309958 EST5311708 GESD Medicago truncatula cDNA clone pGESD4L15 5' end,
mRNA sequence
Length = 731
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 582 ccatggcttcatatttccattgtagtg 608
||||||||||||||| |||||||||||
Sbjct: 511 ccatggcttcatattaccattgtagtg 485
>gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORKING DRAFT SEQUENCE
Length = 127679
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 582 ccatggcttcatatttccattgtagtg 608
||||||||||||||| |||||||||||
Sbjct: 86632 ccatggcttcatattaccattgtagtg 86658
>emb|CR341503.1| mte1-73J4RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 471
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtg 608
||||| ||||||||||| |||||||||||
Sbjct: 278 agccacggcttcatattaccattgtagtg 306
>gb|AL377155.1|AL377155 MtBB29G01R1 MtBB Medicago truncatula cDNA clone MtBB29G01 T7, mRNA
sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.075
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 655 ccaagtcccaaaacatgccat 675
|||||||||||||||||||||
Sbjct: 129 ccaagtcccaaaacatgccat 109
>gb|BI272689.1|BI272689 NF024D06FL1F1057 Developing flower Medicago truncatula cDNA clone
NF024D06FL 5', mRNA sequence
Length = 724
Score = 42.1 bits (21), Expect = 0.075
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 655 ccaagtcccaaaacatgccat 675
|||||||||||||||||||||
Sbjct: 322 ccaagtcccaaaacatgccat 302
>gb|BQ146070.1|BQ146070 NF010A12GS1F1088 Germinating Seed Medicago truncatula cDNA clone
NF010A12GS 5', mRNA sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
||||| ||||||||||| |||||||||||
Sbjct: 53 agccacggcttcatattaccattgtagtg 25
>gb|CA990579.1|CA990579 EST644087 GESD Medicago truncatula cDNA clone GESD-29M9, mRNA
sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.075
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 655 ccaagtcccaaaacatgccat 675
|||||||||||||||||||||
Sbjct: 435 ccaagtcccaaaacatgccat 415
>gb|CX537219.1|CX537219 s13dNF10A12GS088_457644 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
||||| ||||||||||| |||||||||||
Sbjct: 46 agccacggcttcatattaccattgtagtg 18
>gb|CX537716.1|CX537716 s13dNF35D08GS062_458664 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 201
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
||||| ||||||||||| |||||||||||
Sbjct: 46 agccacggcttcatattaccattgtagtg 18
>gb|CX538323.1|CX538323 s13dNF80A11GS081_459898 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.075
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 655 ccaagtcccaaaacatgccat 675
|||||||||||||||||||||
Sbjct: 585 ccaagtcccaaaacatgccat 565
>gb|CX540878.1|CX540878 s13dNF05B03GS029_465036 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccattgtagtg 608
||||| ||||||||||| |||||||||||
Sbjct: 46 agccacggcttcatattaccattgtagtg 18
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
Length = 172016
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 582 ccatggcttcatatttccattgtagtgca 610
|||||||||||| || |||||||||||||
Sbjct: 52118 ccatggcttcatgttcccattgtagtgca 52146
>gb|AC174296.3| Medicago truncatula clone mth2-72l21, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 114521
Score = 42.1 bits (21), Expect = 0.075
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 655 ccaagtcccaaaacatgccat 675
|||||||||||||||||||||
Sbjct: 51193 ccaagtcccaaaacatgccat 51173
>gb|CG921442.1|CG921442 MBEFI44TR mth2 Medicago truncatula genomic clone 44G15, DNA
sequence
Length = 776
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 579 gagccatggcttcatatttccatt 602
||||||||| ||||||||||||||
Sbjct: 732 gagccatggtttcatatttccatt 709
>emb|CR326371.1| mte1-54D15RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 574 attttgagccatggcttcat 593
||||||||||||||||||||
Sbjct: 424 attttgagccatggcttcat 443
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 271,918
Number of Sequences: 392609
Number of extensions: 271918
Number of successful extensions: 21483
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21428
Number of HSP's gapped (non-prelim): 55
length of query: 846
length of database: 441,732,993
effective HSP length: 20
effective length of query: 826
effective length of database: 433,880,813
effective search space: 358385551538
effective search space used: 358385551538
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)