BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2945733.2.1
(885 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW126054.2|AW126054 N100250e rootphos(-) Medicago trunca... 40 0.31
gb|AW126142.2|AW126142 N100339e rootphos(-) Medicago trunca... 40 0.31
gb|AW329071.2|AW329071 N200275e rootphos(-) Medicago trunca... 40 0.31
gb|BE239462.1|BE239462 EST403511 MHRP- Medicago truncatula ... 40 0.31
gb|BE239823.1|BE239823 EST403872 MHRP- Medicago truncatula ... 40 0.31
gb|AL382074.1|AL382074 MtBC04F08F1 MtBC Medicago truncatula... 40 0.31
gb|AL382075.1|AL382075 MtBC04F08R1 MtBC Medicago truncatula... 40 0.31
gb|BF643705.1|BF643705 NF092H12EC1F1104 Elicited cell cultu... 40 0.31
gb|BF643883.1|BF643883 NF089D08EC1F1074 Elicited cell cultu... 40 0.31
gb|BF645084.1|BF645084 NF034D09EC1F1077 Elicited cell cultu... 40 0.31
gb|BF646330.1|BF646330 NF068H10EC1F1091 Elicited cell cultu... 40 0.31
gb|BF647820.1|BF647820 NF012D03EC1F1028 Elicited cell cultu... 40 0.31
gb|BF648690.1|BF648690 NF050D01EC1F1012 Elicited cell cultu... 40 0.31
gb|BF650273.1|BF650273 NF086D06EC1F1048 Elicited cell cultu... 40 0.31
gb|BF650359.1|BF650359 NF087C12EC1F1088 Elicited cell cultu... 40 0.31
gb|BF651064.1|BF651064 NF100D07EC1F1060 Elicited cell cultu... 40 0.31
gb|BG448158.1|BG448158 NF106D10EC1F1080 Elicited cell cultu... 40 0.31
gb|BG588435.1|BG588435 EST490244 MHRP- Medicago truncatula ... 40 0.31
gb|BG588770.1|BG588770 EST490579 MHRP- Medicago truncatula ... 40 0.31
gb|BG588992.1|BG588992 EST490801 MHRP- Medicago truncatula ... 40 0.31
gb|BG648327.1|BG648327 EST509946 HOGA Medicago truncatula c... 40 0.31
gb|CA922194.1|CA922194 EST639912 MTUS Medicago truncatula c... 40 0.31
gb|AJ845669.1|AJ845669 AJ845669 MtSNF Medicago truncatula c... 40 0.31
gb|CX533494.1|CX533494 s13dNF0FH02MJ016_320143 Methyl Jasmo... 40 0.31
>gb|AW126054.2|AW126054 N100250e rootphos(-) Medicago truncatula cDNA clone MHRP-3G5, mRNA
sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 243 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 294
>gb|AW126142.2|AW126142 N100339e rootphos(-) Medicago truncatula cDNA clone MHRP-4G5, mRNA
sequence
Length = 516
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 227 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 278
>gb|AW329071.2|AW329071 N200275e rootphos(-) Medicago truncatula cDNA clone MHRP-15H11,
mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 241 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 292
>gb|BE239462.1|BE239462 EST403511 MHRP- Medicago truncatula cDNA clone pMHRP-28A24, mRNA
sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 210 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 261
>gb|BE239823.1|BE239823 EST403872 MHRP- Medicago truncatula cDNA clone pMHRP-38B11, mRNA
sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 35 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 86
>gb|AL382074.1|AL382074 MtBC04F08F1 MtBC Medicago truncatula cDNA clone MtBC04F08 T3, mRNA
sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 230 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 281
>gb|AL382075.1|AL382075 MtBC04F08R1 MtBC Medicago truncatula cDNA clone MtBC04F08 T7, mRNA
sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 15 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 66
>gb|BF643705.1|BF643705 NF092H12EC1F1104 Elicited cell culture Medicago truncatula cDNA
clone NF092H12EC 5', mRNA sequence
Length = 561
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 214 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 265
>gb|BF643883.1|BF643883 NF089D08EC1F1074 Elicited cell culture Medicago truncatula cDNA
clone NF089D08EC 5', mRNA sequence
Length = 361
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 224 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 275
>gb|BF645084.1|BF645084 NF034D09EC1F1077 Elicited cell culture Medicago truncatula cDNA
clone NF034D09EC 5', mRNA sequence
Length = 390
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 219 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 270
>gb|BF646330.1|BF646330 NF068H10EC1F1091 Elicited cell culture Medicago truncatula cDNA
clone NF068H10EC 5', mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 235 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 286
>gb|BF647820.1|BF647820 NF012D03EC1F1028 Elicited cell culture Medicago truncatula cDNA
clone NF012D03EC 5', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 246 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 297
>gb|BF648690.1|BF648690 NF050D01EC1F1012 Elicited cell culture Medicago truncatula cDNA
clone NF050D01EC 5', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 235 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 286
>gb|BF650273.1|BF650273 NF086D06EC1F1048 Elicited cell culture Medicago truncatula cDNA
clone NF086D06EC 5', mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 244 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 295
>gb|BF650359.1|BF650359 NF087C12EC1F1088 Elicited cell culture Medicago truncatula cDNA
clone NF087C12EC 5', mRNA sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 234 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 285
>gb|BF651064.1|BF651064 NF100D07EC1F1060 Elicited cell culture Medicago truncatula cDNA
clone NF100D07EC 5', mRNA sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 236 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 287
>gb|BG448158.1|BG448158 NF106D10EC1F1080 Elicited cell culture Medicago truncatula cDNA
clone NF106D10EC 5', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 222 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 273
>gb|BG588435.1|BG588435 EST490244 MHRP- Medicago truncatula cDNA clone pMHRP-53O3, mRNA
sequence
Length = 763
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 182 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 233
>gb|BG588770.1|BG588770 EST490579 MHRP- Medicago truncatula cDNA clone pMHRP-57O16, mRNA
sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 202 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 253
>gb|BG588992.1|BG588992 EST490801 MHRP- Medicago truncatula cDNA clone pMHRP-59I10, mRNA
sequence
Length = 743
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 233 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 284
>gb|BG648327.1|BG648327 EST509946 HOGA Medicago truncatula cDNA clone pHOGA-19O24 5' end,
mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 130 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 181
>gb|CA922194.1|CA922194 EST639912 MTUS Medicago truncatula cDNA clone MTUS-50E12, mRNA
sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 425 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 374
>gb|AJ845669.1|AJ845669 AJ845669 MtSNF Medicago truncatula cDNA clone MtNF08L05N1, mRNA
sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 181 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 130
>gb|CX533494.1|CX533494 s13dNF0FH02MJ016_320143 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.31
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 362 tggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgac 413
||||||| ||| ||||||||||| | || |||||||| ||||| |||||||
Sbjct: 68 tggagaaaaacaccaagctcaagccacatgccatgtctgtctttctcatgac 119
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,563
Number of Sequences: 392609
Number of extensions: 97563
Number of successful extensions: 5733
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5708
Number of HSP's gapped (non-prelim): 25
length of query: 885
length of database: 441,732,993
effective HSP length: 20
effective length of query: 865
effective length of database: 433,880,813
effective search space: 375306903245
effective search space used: 375306903245
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)