BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943843.2.1
(2639 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB895175.1|CB895175 EST647967 HOGA Medicago truncatula c... 68 4e-009
gb|CA918672.1|CA918672 EST636390 MTUS Medicago truncatula c... 68 4e-009
gb|AC149601.3| Medicago truncatula chromosome 7 BAC clone m... 68 4e-009
emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2... 68 4e-009
gb|BF640607.1|BF640607 NF014D06IN1F1057 Insect herbivory Me... 62 3e-007
gb|AW685844.1|AW685844 NF030H07NR1F1000 Nodulated root Medi... 60 1e-006
gb|BQ164885.1|BQ164885 EST610754 KVKC Medicago truncatula c... 60 1e-006
gb|AL383955.1|AL383955 MtBC18A05F1 MtBC Medicago truncatula... 58 4e-006
gb|CA858196.1|CA858196 EST635451 GLSD Medicago truncatula c... 58 4e-006
gb|AC135796.25| Medicago truncatula clone mth2-28b18, compl... 58 4e-006
gb|AW775132.1|AW775132 EST334283 KV3 Medicago truncatula cD... 52 2e-004
gb|AL378058.1|AL378058 MtBB35G01R1 MtBB Medicago truncatula... 50 0.001
gb|BF636279.1|BF636279 NF106F01DT1F1013 Drought Medicago tr... 50 0.001
gb|BG454296.1|BG454296 NF110A10LF1F1070 Developing leaf Med... 50 0.001
gb|CX533578.1|CX533578 s13dNF0HB06MJ045_320309 Methyl Jasmo... 50 0.001
gb|DW018010.1|DW018010 EST1226971 MTY Medicago truncatula c... 50 0.001
gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone m... 50 0.001
gb|CG967073.1|CG967073 MBEIW61TR mth2 Medicago truncatula g... 46 0.015
emb|CR500785.1| mth2-178C2FM1 BAC end, cultivar Jemalong A1... 46 0.015
gb|BG647852.1|BG647852 EST509471 HOGA Medicago truncatula c... 46 0.015
gb|BI271412.1|BI271412 NF050H09FL1F1080 Developing flower M... 46 0.015
gb|CA919580.1|CA919580 EST637298 MTUS Medicago truncatula c... 46 0.015
gb|AJ845814.1|AJ845814 AJ845814 MtSNF Medicago truncatula c... 46 0.015
emb|CR931742.1| Medicago truncatula chromosome 5 clone mth2... 46 0.015
emb|CR962136.2| Medicago truncatula chromosome 5 clone mth2... 46 0.015
gb|AC169173.2| Medicago truncatula chromosome 7 clone mth2-... 46 0.015
emb|CT571262.1| Medicago truncatula chromosome 5 clone mth2... 46 0.015
gb|AC146559.18| Medicago truncatula clone mth2-12e5, WORKIN... 46 0.015
emb|CR968574.1| mth4-27F14RM1 BAC end, cultivar Jemalong A1... 44 0.060
gb|AI974582.1|AI974582 T113032e KV2 Medicago truncatula cDN... 44 0.060
gb|AW257155.1|AW257155 EST305292 KV2 Medicago truncatula cD... 44 0.060
gb|AW693707.1|AW693707 NF068C11ST1F1085 Developing stem Med... 44 0.060
gb|BE187645.1|BE187645 EST336206 KV0 Medicago truncatula cD... 44 0.060
gb|BE322193.1|BE322193 NF020C12IN1F1087 Insect herbivory Me... 44 0.060
gb|AL368493.1|AL368493 MtBA24H02F1 MtBA Medicago truncatula... 44 0.060
gb|AL368767.1|AL368767 MtBA26F03F1 MtBA Medicago truncatula... 44 0.060
gb|AL369517.1|AL369517 MtBA31F02F1 MtBA Medicago truncatula... 44 0.060
gb|AL369566.1|AL369566 MtBA31H12F1 MtBA Medicago truncatula... 44 0.060
gb|BF003340.1|BF003340 EST431838 KV1 Medicago truncatula cD... 44 0.060
gb|BE321479.2|BE321479 NF020C12IN1F1086 Insect herbivory Me... 44 0.060
gb|BG644509.1|BG644509 EST506128 KV3 Medicago truncatula cD... 44 0.060
gb|CB891145.1|CB891145 EST648114 KV3 Medicago truncatula cD... 44 0.060
gb|CX529290.1|CX529290 s13dNF18F11MJ091_244638 Methyl Jasmo... 44 0.060
gb|CX530519.1|CX530519 s13dNF43D04MJ031_247063 Methyl Jasmo... 44 0.060
gb|CX539565.1|CX539565 s13dNF65D10GS078_462392 Germinating ... 44 0.060
gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone m... 44 0.060
gb|AC150778.5| Medicago truncatula chromosome 2 clone mte1-... 44 0.060
gb|AC171533.2| Medicago truncatula chromosome 7 clone mth2-... 44 0.060
gb|CG927356.1|CG927356 MBEKC13TFB mth2 Medicago truncatula ... 42 0.24
gb|CG958974.1|CG958974 MBELX21TR mth2 Medicago truncatula g... 42 0.24
gb|CG960400.1|CG960400 MBEFM46TR mth2 Medicago truncatula g... 42 0.24
gb|CG961522.1|CG961522 MBEMT01TF mth2 Medicago truncatula g... 42 0.24
emb|CR326689.1| mte1-55A13FM1 BAC end, cultivar Jemalong A1... 42 0.24
gb|BG645026.1|BG645026 EST506645 KV3 Medicago truncatula cD... 42 0.24
gb|CA857877.1|CA857877 EST635132 GLSD Medicago truncatula c... 42 0.24
gb|CA858080.1|CA858080 EST635335 GLSD Medicago truncatula c... 42 0.24
gb|AC123572.15| Medicago truncatula clone mth2-2b2, complet... 42 0.24
gb|AC152351.7| Medicago truncatula clone mth2-75b20, comple... 42 0.24
gb|AC140550.31| Medicago truncatula clone mth2-54a24, compl... 42 0.24
gb|AC152423.17| Medicago truncatula clone mth2-31c9, comple... 42 0.24
>gb|CB895175.1|CB895175 EST647967 HOGA Medicago truncatula cDNA clone HOGA-33F20, mRNA
sequence
Length = 861
Score = 67.9 bits (34), Expect = 4e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactcttg 732
||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 482 agttcaagcataacaactccaaagctgtatacatcactcttg 441
>gb|CA918672.1|CA918672 EST636390 MTUS Medicago truncatula cDNA clone MTUS-1F7, mRNA
sequence
Length = 815
Score = 67.9 bits (34), Expect = 4e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactcttg 732
||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 533 agttcaagcataacaactccaaagctgtatacatcactcttg 574
>gb|AC149601.3| Medicago truncatula chromosome 7 BAC clone mth2-28b24, complete
sequence
Length = 112486
Score = 67.9 bits (34), Expect = 4e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactcttg 732
||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 77362 agttcaagcataacaactccaaagctgtatacatcactcttg 77403
>emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE
Length = 136545
Score = 67.9 bits (34), Expect = 4e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactcttg 732
||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 124912 agttcaagcataacaactccaaagctgtatacatcactcttg 124871
>gb|BF640607.1|BF640607 NF014D06IN1F1057 Insect herbivory Medicago truncatula cDNA clone
NF014D06IN 5', mRNA sequence
Length = 627
Score = 61.9 bits (31), Expect = 3e-007
Identities = 210/270 (77%)
Strand = Plus / Plus
Query: 462 tgcttgcaccacctctgacattggtggcctgaattctggttcaggctggacacacagggc 521
|||||| ||||| |||||||| ||||| | |||||| ||||| | ||| ||||| || ||
Sbjct: 286 tgcttgaaccacttctgacataggtggtcggaattcaggttccgactgaacacaaagagc 345
Query: 522 aaggacatcagcaaatcgggatagagatttagctgggtatagacccttgagtgcaggatc 581
|| |||||| || ||||| || ||||| || | ||||| | || | |||||||||||
Sbjct: 346 aatgacatcggcgaatcgagaaagagacttgacagggtacattccttctagtgcaggatc 405
Query: 582 gaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtga 641
||||| | ||||||| || |||||||| || || ||||||||||| || || | ||
Sbjct: 406 aaccattttagccaatgcatcaatgtcatggagttgaggtgttgcccatcgaaccaacga 465
Query: 642 ctgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagttcaagcat 701
||| || |||| | || ||||| ||||||||| | ||||| | | || || | |||
Sbjct: 466 ctgctcaaacctagaccttgagctatcaaatggtttccgtccacttanaagctccaacat 525
Query: 702 gacaactccaaagctgtaaacatcactctt 731
|||||||||||||||||| |||||||||||
Sbjct: 526 gacaactccaaagctgtagacatcactctt 555
>gb|AW685844.1|AW685844 NF030H07NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF030H07NR 5', mRNA sequence
Length = 660
Score = 60.0 bits (30), Expect = 1e-006
Identities = 210/270 (77%)
Strand = Plus / Minus
Query: 462 tgcttgcaccacctctgacattggtggcctgaattctggttcaggctggacacacagggc 521
|||||| ||||| |||||||| ||||| | |||||| ||||| | ||| ||||| || ||
Sbjct: 529 tgcttgaaccacttctgacataggtggtcggaattcaggttccgactgaacacaaagagc 470
Query: 522 aaggacatcagcaaatcgggatagagatttagctgggtatagacccttgagtgcaggatc 581
|| |||||| || ||||| || ||||| || | ||||| | || | |||||||||||
Sbjct: 469 aatgacatcggcgaatcgagaaagagacttgacagggtacattccttctagtgcaggatc 410
Query: 582 gaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtga 641
||||| | ||||||| || |||||||| || || ||||||||||| || || | ||
Sbjct: 409 aaccattttagccaatgcatcaatgtcatggagttgaggtgttgcccatcgaaccaacga 350
Query: 642 ctgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagttcaagcat 701
||| || |||| | || ||||| ||||||||| | ||||| | | || || | |||
Sbjct: 349 ctgctcaaacctagaccttgagctatcaaatggtttccgtccacttagaagctccaacat 290
Query: 702 gacaactccaaagctgtaaacatcactctt 731
|||||||||||||||||| |||||||||||
Sbjct: 289 gacaactccaaagctgtagacatcactctt 260
>gb|BQ164885.1|BQ164885 EST610754 KVKC Medicago truncatula cDNA clone pKVKC-3C11, mRNA
sequence
Length = 782
Score = 60.0 bits (30), Expect = 1e-006
Identities = 210/270 (77%)
Strand = Plus / Plus
Query: 462 tgcttgcaccacctctgacattggtggcctgaattctggttcaggctggacacacagggc 521
|||||| ||||| |||||||| ||||| | |||||| ||||| | ||| ||||| || ||
Sbjct: 300 tgcttgaaccacttctgacataggtggtcggaattcaggttccgactgaacacaaagagc 359
Query: 522 aaggacatcagcaaatcgggatagagatttagctgggtatagacccttgagtgcaggatc 581
|| |||||| || ||||| || ||||| || | ||||| | || | |||||||||||
Sbjct: 360 aatgacatcggcgaatcgagaaagagacttgacagggtacattccttctagtgcaggatc 419
Query: 582 gaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtga 641
||||| | ||||||| || |||||||| || || ||||||||||| || || | ||
Sbjct: 420 aaccattttagccaatgcatcaatgtcatggagttgaggtgttgcccatcgaaccaacga 479
Query: 642 ctgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagttcaagcat 701
||| || |||| | || ||||| ||||||||| | ||||| | | || || | |||
Sbjct: 480 ctgctcaaacctagaccttgagctatcaaatggtttccgtccacttagaagctccaacat 539
Query: 702 gacaactccaaagctgtaaacatcactctt 731
|||||||||||||||||| |||||||||||
Sbjct: 540 gacaactccaaagctgtagacatcactctt 569
>gb|AL383955.1|AL383955 MtBC18A05F1 MtBC Medicago truncatula cDNA clone MtBC18A05 T3, mRNA
sequence
Length = 427
Score = 58.0 bits (29), Expect = 4e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 699 catgacaactccaaagctgtaaacatcactctt 731
||||||||||||||||||||| |||||||||||
Sbjct: 221 catgacaactccaaagctgtagacatcactctt 189
>gb|CA858196.1|CA858196 EST635451 GLSD Medicago truncatula cDNA clone pGLSD-27C24, mRNA
sequence
Length = 789
Score = 58.0 bits (29), Expect = 4e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 699 catgacaactccaaagctgtaaacatcactctt 731
||||||||||||||||||||| |||||||||||
Sbjct: 490 catgacaactccaaagctgtagacatcactctt 458
>gb|AC135796.25| Medicago truncatula clone mth2-28b18, complete sequence
Length = 118959
Score = 58.0 bits (29), Expect = 4e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 699 catgacaactccaaagctgtaaacatcactctt 731
||||||||||||||||||||| |||||||||||
Sbjct: 52291 catgacaactccaaagctgtagacatcactctt 52259
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 48068 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 48027
>gb|AW775132.1|AW775132 EST334283 KV3 Medicago truncatula cDNA clone pKV3-25F18, mRNA
sequence
Length = 480
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 390 cctgagcaagtaatgcctgtccaagactgtccacaaggatca 349
>gb|AL378058.1|AL378058 MtBB35G01R1 MtBB Medicago truncatula cDNA clone MtBB35G01 T7, mRNA
sequence
Length = 320
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 682 cctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
|||||||| ||||| | ||| || ||||||||||||||||| |||||||
Sbjct: 279 cctgtcaaaagttccaacataacgactccaaagctgtaaacgtcactct 231
>gb|BF636279.1|BF636279 NF106F01DT1F1013 Drought Medicago truncatula cDNA clone NF106F01DT
5', mRNA sequence
Length = 472
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 679 cgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactctt 731
||||||||||| || ||||| | |||||| ||| ||||||| |||||||||||
Sbjct: 409 cgtcctgtcaaaagctcaagaaggacaacaccatagctgtatacatcactctt 357
>gb|BG454296.1|BG454296 NF110A10LF1F1070 Developing leaf Medicago truncatula cDNA clone
NF110A10LF 5', mRNA sequence
Length = 666
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 679 cgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactctt 731
||||||||||| || ||||| | |||||| ||| ||||||| |||||||||||
Sbjct: 150 cgtcctgtcaaaagctcaagaaggacaacaccatagctgtatacatcactctt 98
>gb|CX533578.1|CX533578 s13dNF0HB06MJ045_320309 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 574
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 679 cgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactctt 731
||||||||||| || ||||| | |||||| ||| ||||||| |||||||||||
Sbjct: 441 cgtcctgtcaaaagctcaagaaggacaacaccatagctgtatacatcactctt 389
>gb|DW018010.1|DW018010 EST1226971 MTY Medicago truncatula cDNA clone MTYB113, mRNA
sequence
Length = 810
Score = 50.1 bits (25), Expect = 0.001
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 682 cctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactct 730
|||||||| ||||| | ||| || ||||||||||||||||| |||||||
Sbjct: 404 cctgtcaaaagttccaacataacgactccaaagctgtaaacgtcactct 356
>gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-168l8, complete
sequence
Length = 145061
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 679 cgtcctgtcaatagttcaagcatgacaactccaaagctgtaaacatcactctt 731
||||||||||| || ||||| | |||||| ||| ||||||| |||||||||||
Sbjct: 38232 cgtcctgtcaaaagctcaagaaggacaacaccatagctgtatacatcactctt 38180
>gb|CG967073.1|CG967073 MBEIW61TR mth2 Medicago truncatula genomic clone 65L1, DNA sequence
Length = 886
Score = 46.1 bits (23), Expect = 0.015
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 705 aactccaaagctgtaaacatcactctt 731
||||||||| |||||||||||||||||
Sbjct: 363 aactccaaaactgtaaacatcactctt 389
>emb|CR500785.1| mth2-178C2FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 689
Score = 46.1 bits (23), Expect = 0.015
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 693 ttcaagcatgacaactccaaagctgtaaacatcactctt 731
|||||||| |||||||||||| || || |||||||||||
Sbjct: 348 ttcaagcaggacaactccaaaactatagacatcactctt 310
>gb|BG647852.1|BG647852 EST509471 HOGA Medicago truncatula cDNA clone pHOGA-18G19 5' end,
mRNA sequence
Length = 680
Score = 46.1 bits (23), Expect = 0.015
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 695 caagcatgacaact-ccaaagctgtaaacatcactcttg 732
||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 677 caagcataacaacttccaaagctgtatacatcactcttg 639
>gb|BI271412.1|BI271412 NF050H09FL1F1080 Developing flower Medicago truncatula cDNA clone
NF050H09FL 5', mRNA sequence
Length = 650
Score = 46.1 bits (23), Expect = 0.015
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 705 aactccaaagctgtaaacatcactctt 731
||||||||| |||||||||||||||||
Sbjct: 299 aactccaaaactgtaaacatcactctt 273
>gb|CA919580.1|CA919580 EST637298 MTUS Medicago truncatula cDNA clone MTUS-15D7, mRNA
sequence
Length = 766
Score = 46.1 bits (23), Expect = 0.015
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 693 ttcaagcatgacaactccaaagctgtaaacatcactctt 731
|||||||| |||||||||||| || || |||||||||||
Sbjct: 627 ttcaagcaggacaactccaaaactatagacatcactctt 665
>gb|AJ845814.1|AJ845814 AJ845814 MtSNF Medicago truncatula cDNA clone MtNF11C09N1, mRNA
sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.015
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 705 aactccaaagctgtaaacatcactctt 731
||||||||| |||||||||||||||||
Sbjct: 553 aactccaaaactgtaaacatcactctt 527
>emb|CR931742.1| Medicago truncatula chromosome 5 clone mth2-28i20, COMPLETE SEQUENCE
Length = 115743
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1364 aaaaatcatcatcatcatcaaat 1386
|||||||||||||||||||||||
Sbjct: 1091 aaaaatcatcatcatcatcaaat 1113
>emb|CR962136.2| Medicago truncatula chromosome 5 clone mth2-52n22, COMPLETE SEQUENCE
Length = 87738
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1364 aaaaatcatcatcatcatcaaat 1386
|||||||||||||||||||||||
Sbjct: 36559 aaaaatcatcatcatcatcaaat 36581
>gb|AC169173.2| Medicago truncatula chromosome 7 clone mth2-107b13, *** SEQUENCING IN
PROGRESS ***
Length = 97601
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1368 atcatcatcatcatcaaatgatt 1390
|||||||||||||||||||||||
Sbjct: 14758 atcatcatcatcatcaaatgatt 14780
>emb|CT571262.1| Medicago truncatula chromosome 5 clone mth2-35p15, WORKING DRAFT
SEQUENCE
Length = 105525
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 709 ccaaagctgtaaacatcactctt 731
|||||||||||||||||||||||
Sbjct: 70856 ccaaagctgtaaacatcactctt 70878
>gb|AC146559.18| Medicago truncatula clone mth2-12e5, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 127562
Score = 46.1 bits (23), Expect = 0.015
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatc 725
|||||||||| |||||||||||| ||||| |||||
Sbjct: 102989 agttcaagcaagacaactccaaaactgtatacatc 103023
>emb|CR968574.1| mth4-27F14RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.060
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 706 actccaaagctgtaaacatcactctt 731
|||||||||||||| |||||||||||
Sbjct: 609 actccaaagctgtatacatcactctt 634
>gb|AI974582.1|AI974582 T113032e KV2 Medicago truncatula cDNA clone pKV2-1B21, mRNA sequence
Length = 454
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 170 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 129
>gb|AW257155.1|AW257155 EST305292 KV2 Medicago truncatula cDNA clone KV2-7I22, mRNA sequence
Length = 550
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 229 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 188
>gb|AW693707.1|AW693707 NF068C11ST1F1085 Developing stem Medicago truncatula cDNA clone
NF068C11ST 5', mRNA sequence
Length = 658
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 482 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 441
>gb|BE187645.1|BE187645 EST336206 KV0 Medicago truncatula cDNA clone pKV0-16M13, mRNA
sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 278 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 237
>gb|BE322193.1|BE322193 NF020C12IN1F1087 Insect herbivory Medicago truncatula cDNA clone
NF020C12IN 5', mRNA sequence
Length = 673
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 116 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 75
>gb|AL368493.1|AL368493 MtBA24H02F1 MtBA Medicago truncatula cDNA clone MtBA24H02 T3, mRNA
sequence
Length = 495
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 381 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 340
>gb|AL368767.1|AL368767 MtBA26F03F1 MtBA Medicago truncatula cDNA clone MtBA26F03 T3, mRNA
sequence
Length = 469
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 338 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 297
>gb|AL369517.1|AL369517 MtBA31F02F1 MtBA Medicago truncatula cDNA clone MtBA31F02 T3, mRNA
sequence
Length = 458
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 97 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 56
>gb|AL369566.1|AL369566 MtBA31H12F1 MtBA Medicago truncatula cDNA clone MtBA31H12 T3, mRNA
sequence
Length = 460
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 145 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 104
>gb|BF003340.1|BF003340 EST431838 KV1 Medicago truncatula cDNA clone pKV1-5B1, mRNA sequence
Length = 305
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 229 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 188
>gb|BE321479.2|BE321479 NF020C12IN1F1086 Insect herbivory Medicago truncatula cDNA clone
NF020C12IN 5', mRNA sequence
Length = 346
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 116 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 75
>gb|BG644509.1|BG644509 EST506128 KV3 Medicago truncatula cDNA clone pKV3-37D1 5' end, mRNA
sequence
Length = 787
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 199 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 158
>gb|CB891145.1|CB891145 EST648114 KV3 Medicago truncatula cDNA clone KV3-49E22, mRNA sequence
Length = 757
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 118 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 77
>gb|CX529290.1|CX529290 s13dNF18F11MJ091_244638 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 634
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 283 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 242
>gb|CX530519.1|CX530519 s13dNF43D04MJ031_247063 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 507
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 237 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 196
>gb|CX539565.1|CX539565 s13dNF65D10GS078_462392 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 601
Score = 44.1 bits (22), Expect = 0.060
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 2296 cctgagcaagtaatgcccttccatgactggccacaaggatca 2337
||||||||||| ||||| |||| ||||| ||||||||||||
Sbjct: 291 cctgagcaagtgatgcctgtccaagactgtccacaaggatca 250
>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete sequence
Length = 132371
Score = 44.1 bits (22), Expect = 0.060
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcact 728
||||| |||| |||||||||| |||| |||||||||||
Sbjct: 102841 agttctagcaagacaactccatagctataaacatcact 102804
>gb|AC150778.5| Medicago truncatula chromosome 2 clone mte1-58h9, *** SEQUENCING IN
PROGRESS ***
Length = 104364
Score = 44.1 bits (22), Expect = 0.060
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 706 actccaaagctgtaaacatcactctt 731
|||||||||||||| |||||||||||
Sbjct: 72707 actccaaagctgtatacatcactctt 72732
>gb|AC171533.2| Medicago truncatula chromosome 7 clone mth2-82b20, *** SEQUENCING IN
PROGRESS ***
Length = 94638
Score = 44.1 bits (22), Expect = 0.060
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcact 728
||||| |||| |||||||||| |||| |||||||||||
Sbjct: 20747 agttctagcaagacaactccatagctataaacatcact 20710
>gb|CG927356.1|CG927356 MBEKC13TFB mth2 Medicago truncatula genomic clone 72D1, DNA
sequence
Length = 896
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 703 acaactccaaagctgtaaacatcactctt 731
|||||||| ||||| ||||||||||||||
Sbjct: 493 acaactccgaagctataaacatcactctt 521
>gb|CG958974.1|CG958974 MBELX21TR mth2 Medicago truncatula genomic clone 83D18, DNA
sequence
Length = 882
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 703 acaactccaaagctgtaaacatcactctt 731
||||||||||| ||||| |||||||||||
Sbjct: 634 acaactccaaaactgtatacatcactctt 662
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 777,790
Number of Sequences: 392609
Number of extensions: 777790
Number of successful extensions: 72306
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71936
Number of HSP's gapped (non-prelim): 361
length of query: 2639
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2619
effective length of database: 433,880,813
effective search space: 1136333849247
effective search space used: 1136333849247
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)