BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2922023.2.1
(1122 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI270294.1|BI270294 NF008H10FL1F1092 Developing flower M... 40 0.39
gb|BQ149406.1|BQ149406 NF090B07FL1F1061 Developing flower M... 40 0.39
gb|CX540023.1|CX540023 s13dNF43H10GS080_463318 Germinating ... 40 0.39
gb|CX540709.1|CX540709 s13dNF55H05GS048_464696 Germinating ... 40 0.39
>gb|BI270294.1|BI270294 NF008H10FL1F1092 Developing flower Medicago truncatula cDNA clone
NF008H10FL 5', mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.39
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtcctt 884
|||||||| |||||||||||||| || |||||
Sbjct: 467 gcccagcaactaccgcattggccttgatcctt 436
>gb|BQ149406.1|BQ149406 NF090B07FL1F1061 Developing flower Medicago truncatula cDNA clone
NF090B07FL 5', mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.39
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtcctt 884
|||||||| |||||||||||||| || |||||
Sbjct: 410 gcccagcaactaccgcattggccttgatcctt 379
>gb|CX540023.1|CX540023 s13dNF43H10GS080_463318 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.39
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtcctt 884
|||||||| |||||||||||||| || |||||
Sbjct: 470 gcccagcaactaccgcattggccttgatcctt 439
>gb|CX540709.1|CX540709 s13dNF55H05GS048_464696 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.39
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 853 gcccagcagctaccgcattggccctggtcctt 884
|||||||| |||||||||||||| || |||||
Sbjct: 473 gcccagcaactaccgcattggccttgatcctt 442
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,980
Number of Sequences: 392609
Number of extensions: 127980
Number of successful extensions: 10000
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9996
Number of HSP's gapped (non-prelim): 4
length of query: 1122
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1102
effective length of database: 433,880,813
effective search space: 478136655926
effective search space used: 478136655926
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)