BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2850725.2.1
         (847 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR325572.1|  mte1-53K17RM1 BAC end, cultivar Jemalong A1...    40   0.30 
emb|CR344760.1|  mte1-78B13RM1 BAC end, cultivar Jemalong A1...    40   0.30 
emb|CR300506.1|  mte1-18L8RM1 BAC end, cultivar Jemalong A17...    40   0.30 
emb|CR301563.1|  mte1-2O24RM1 BAC end, cultivar Jemalong A17...    40   0.30 
gb|AW560370.1|AW560370  EST315418 DSIR Medicago truncatula c...    40   0.30 
gb|AL388318.1|AL388318  MtBC47H04F1 MtBC Medicago truncatula...    40   0.30 
gb|BQ165539.1|BQ165539  EST611408 KVKC Medicago truncatula c...    40   0.30 
gb|AC142223.10|  Medicago truncatula clone mth2-5e21, comple...    40   0.30 
gb|AC137995.31|  Medicago truncatula clone mth2-11j1, comple...    40   0.30 
emb|CR936328.1|  Medicago truncatula chromosome 5 clone mth4...    40   0.30 
gb|AC171618.7|  Medicago truncatula clone mth2-144n17, WORKI...    40   0.30 
>emb|CR325572.1| mte1-53K17RM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 588

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 agatacttctccaaacgaaa 182
           ||||||||||||||||||||
Sbjct: 271 agatacttctccaaacgaaa 252
>emb|CR344760.1| mte1-78B13RM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 680

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 agatacttctccaaacgaaa 182
           ||||||||||||||||||||
Sbjct: 271 agatacttctccaaacgaaa 252
>emb|CR300506.1| mte1-18L8RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 553

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 agatacttctccaaacgaaa 182
           ||||||||||||||||||||
Sbjct: 271 agatacttctccaaacgaaa 252
>emb|CR301563.1| mte1-2O24RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 652

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 agatacttctccaaacgaaa 182
           ||||||||||||||||||||
Sbjct: 271 agatacttctccaaacgaaa 252
>gb|AW560370.1|AW560370 EST315418 DSIR Medicago truncatula cDNA clone pDSIR-26L24, mRNA
           sequence
          Length = 619

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 702 aacatgtcacctccaacata 721
           ||||||||||||||||||||
Sbjct: 556 aacatgtcacctccaacata 575
>gb|AL388318.1|AL388318 MtBC47H04F1 MtBC Medicago truncatula cDNA clone MtBC47H04 T3, mRNA
           sequence
          Length = 477

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 702 aacatgtcacctccaacata 721
           ||||||||||||||||||||
Sbjct: 64  aacatgtcacctccaacata 45
>gb|BQ165539.1|BQ165539 EST611408 KVKC Medicago truncatula cDNA clone pKVKC-10A2, mRNA
           sequence
          Length = 762

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 702 aacatgtcacctccaacata 721
           ||||||||||||||||||||
Sbjct: 548 aacatgtcacctccaacata 567
>gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete sequence
          Length = 122763

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  agatacttctccaaacgaaa 182
            ||||||||||||||||||||
Sbjct: 1766 agatacttctccaaacgaaa 1785
>gb|AC137995.31| Medicago truncatula clone mth2-11j1, complete sequence
          Length = 146749

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   tgggtacatattaatagaatacgt 132
             |||||| |||||||||||||||||
Sbjct: 89555 tgggtaaatattaatagaatacgt 89532
>emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4-1f18, COMPLETE SEQUENCE
          Length = 194592

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 109  tgggtacatattaatagaatacgt 132
            |||||| |||||||||||||||||
Sbjct: 1258 tgggtaaatattaatagaatacgt 1235
>gb|AC171618.7| Medicago truncatula clone mth2-144n17, WORKING DRAFT SEQUENCE, 24
             unordered pieces
          Length = 79251

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 702   aacatgtcacctccaacata 721
             ||||||||||||||||||||
Sbjct: 51713 aacatgtcacctccaacata 51694
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 195,142
Number of Sequences: 392609
Number of extensions: 195142
Number of successful extensions: 13943
Number of sequences better than  0.5: 11
Number of HSP's better than  0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13921
Number of HSP's gapped (non-prelim): 22
length of query: 847
length of database: 441,732,993
effective HSP length: 20
effective length of query: 827
effective length of database: 433,880,813
effective search space: 358819432351
effective search space used: 358819432351
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)