BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2850725.2.1
(847 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR325572.1| mte1-53K17RM1 BAC end, cultivar Jemalong A1... 40 0.30
emb|CR344760.1| mte1-78B13RM1 BAC end, cultivar Jemalong A1... 40 0.30
emb|CR300506.1| mte1-18L8RM1 BAC end, cultivar Jemalong A17... 40 0.30
emb|CR301563.1| mte1-2O24RM1 BAC end, cultivar Jemalong A17... 40 0.30
gb|AW560370.1|AW560370 EST315418 DSIR Medicago truncatula c... 40 0.30
gb|AL388318.1|AL388318 MtBC47H04F1 MtBC Medicago truncatula... 40 0.30
gb|BQ165539.1|BQ165539 EST611408 KVKC Medicago truncatula c... 40 0.30
gb|AC142223.10| Medicago truncatula clone mth2-5e21, comple... 40 0.30
gb|AC137995.31| Medicago truncatula clone mth2-11j1, comple... 40 0.30
emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4... 40 0.30
gb|AC171618.7| Medicago truncatula clone mth2-144n17, WORKI... 40 0.30
>emb|CR325572.1| mte1-53K17RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 agatacttctccaaacgaaa 182
||||||||||||||||||||
Sbjct: 271 agatacttctccaaacgaaa 252
>emb|CR344760.1| mte1-78B13RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 agatacttctccaaacgaaa 182
||||||||||||||||||||
Sbjct: 271 agatacttctccaaacgaaa 252
>emb|CR300506.1| mte1-18L8RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 agatacttctccaaacgaaa 182
||||||||||||||||||||
Sbjct: 271 agatacttctccaaacgaaa 252
>emb|CR301563.1| mte1-2O24RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 agatacttctccaaacgaaa 182
||||||||||||||||||||
Sbjct: 271 agatacttctccaaacgaaa 252
>gb|AW560370.1|AW560370 EST315418 DSIR Medicago truncatula cDNA clone pDSIR-26L24, mRNA
sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 702 aacatgtcacctccaacata 721
||||||||||||||||||||
Sbjct: 556 aacatgtcacctccaacata 575
>gb|AL388318.1|AL388318 MtBC47H04F1 MtBC Medicago truncatula cDNA clone MtBC47H04 T3, mRNA
sequence
Length = 477
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 702 aacatgtcacctccaacata 721
||||||||||||||||||||
Sbjct: 64 aacatgtcacctccaacata 45
>gb|BQ165539.1|BQ165539 EST611408 KVKC Medicago truncatula cDNA clone pKVKC-10A2, mRNA
sequence
Length = 762
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 702 aacatgtcacctccaacata 721
||||||||||||||||||||
Sbjct: 548 aacatgtcacctccaacata 567
>gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete sequence
Length = 122763
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 163 agatacttctccaaacgaaa 182
||||||||||||||||||||
Sbjct: 1766 agatacttctccaaacgaaa 1785
>gb|AC137995.31| Medicago truncatula clone mth2-11j1, complete sequence
Length = 146749
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 109 tgggtacatattaatagaatacgt 132
|||||| |||||||||||||||||
Sbjct: 89555 tgggtaaatattaatagaatacgt 89532
>emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4-1f18, COMPLETE SEQUENCE
Length = 194592
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 109 tgggtacatattaatagaatacgt 132
|||||| |||||||||||||||||
Sbjct: 1258 tgggtaaatattaatagaatacgt 1235
>gb|AC171618.7| Medicago truncatula clone mth2-144n17, WORKING DRAFT SEQUENCE, 24
unordered pieces
Length = 79251
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 702 aacatgtcacctccaacata 721
||||||||||||||||||||
Sbjct: 51713 aacatgtcacctccaacata 51694
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 195,142
Number of Sequences: 392609
Number of extensions: 195142
Number of successful extensions: 13943
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13921
Number of HSP's gapped (non-prelim): 22
length of query: 847
length of database: 441,732,993
effective HSP length: 20
effective length of query: 827
effective length of database: 433,880,813
effective search space: 358819432351
effective search space used: 358819432351
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)