BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763196.2.1
(2766 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG930770.1|CG930770 MBEGT48TF mth2 Medicago truncatula g... 72 3e-010
gb|CG947079.1|CG947079 MBENK54TR mth2 Medicago truncatula g... 72 3e-010
gb|CX521592.1|CX521592 s13dNF1LH10VI092_468988 Virus-Infect... 66 2e-008
emb|CT571262.1| Medicago truncatula chromosome 5 clone mth2... 66 2e-008
emb|CR333063.1| mte1-62D12RM1 BAC end, cultivar Jemalong A1... 56 2e-005
gb|BE320606.2|BE320606 NF034H12RT1F1096 Developing root Med... 56 2e-005
gb|AW687052.2|AW687052 NF005E02RT1F1017 Developing root Med... 56 2e-005
gb|BG581347.1|BG581347 EST483080 GVN Medicago truncatula cD... 56 2e-005
gb|AC161403.1| Medicago truncatula chromosome 2 clone mth2-... 56 2e-005
gb|AC175028.4| Medicago truncatula clone mth2-7e22, WORKING... 56 2e-005
gb|CG950365.1|CG950365 MBEIQ05TR mth2 Medicago truncatula g... 54 7e-005
gb|AC149642.2| Medicago truncatula chromosome 2 BAC clone m... 54 7e-005
gb|AC144721.18| Medicago truncatula clone mth2-11o23, compl... 54 7e-005
gb|CG935622.1|CG935622 MBEDL91TRC mth2 Medicago truncatula ... 52 3e-004
gb|CG947070.1|CG947070 MBEEU27TRB mth2 Medicago truncatula ... 50 0.001
emb|CR487121.1| mth2-139F18RM1 BAC end, cultivar Jemalong A... 50 0.001
emb|CR967679.1| mth4-36K19FM1 BAC end, cultivar Jemalong A1... 50 0.001
gb|BQ149583.1|BQ149583 NF106B01FL1F1013 Developing flower M... 50 0.001
emb|CT573216.1| Medicago truncatula chromosome 5 clone mte1... 50 0.001
gb|CG941740.1|CG941740 MBELF33TR mth2 Medicago truncatula g... 48 0.004
emb|CR331264.1| mte1-60G20RM1 BAC end, cultivar Jemalong A1... 48 0.004
emb|CR501997.1| mth2-179A9RM1 BAC end, cultivar Jemalong A1... 48 0.004
emb|CR504186.1| mth2-182K22FM1 BAC end, cultivar Jemalong A... 48 0.004
emb|CR504831.1| mth4-1M22RM1 BAC end, cultivar Jemalong A17... 48 0.004
emb|CR302526.1| mte1-21C11RM1 BAC end, cultivar Jemalong A1... 48 0.004
gb|CA921373.1|CA921373 EST639091 MTUS Medicago truncatula c... 48 0.004
gb|AC144476.11| Medicago truncatula clone mth2-10a6, comple... 48 0.004
gb|AC146866.6| Medicago truncatula clone mth2-19a14, comple... 48 0.004
gb|AC140024.7| Medicago truncatula clone mth2-5f21, WORKING... 48 0.004
emb|CR962125.1| Medicago truncatula chromosome 5 clone mth2... 48 0.004
gb|AC174147.6| Medicago truncatula clone mth2-75g18, WORKIN... 48 0.004
gb|CG922231.1|CG922231 MBEGW28TF mth2 Medicago truncatula g... 46 0.016
emb|CR477868.1| mth2-187C24RM1 BAC end, cultivar Jemalong A... 46 0.016
gb|AC148470.13| Medicago truncatula clone mth2-12e8, WORKIN... 46 0.016
gb|AC157978.25| Medicago truncatula clone mth2-47l16, compl... 46 0.016
gb|AC148470.14| Medicago truncatula clone mth2-12e8, WORKIN... 46 0.016
gb|CG930477.1|CG930477 MBEME60TF mth2 Medicago truncatula g... 44 0.063
emb|CR296212.1| mte1-12H10RM1 BAC end, cultivar Jemalong A1... 44 0.063
gb|CX539359.1|CX539359 s13dNF70A12GS085_461978 Germinating ... 44 0.063
gb|AC123975.16| Medicago truncatula clone mth2-12m13, compl... 44 0.063
gb|CG940055.1|CG940055 MBEES52TR mth2 Medicago truncatula g... 42 0.25
gb|CG940972.1|CG940972 MBEDT69TFC mth2 Medicago truncatula ... 42 0.25
emb|CR488631.1| mth2-157L8FM1 BAC end, cultivar Jemalong A1... 42 0.25
emb|CR502622.1| mth2-179L20FM1 BAC end, cultivar Jemalong A... 42 0.25
emb|CR512612.1| mth4-37E16FM1 BAC end, cultivar Jemalong A1... 42 0.25
gb|BE942879.1|BE942879 EST422458 MGHG Medicago truncatula c... 42 0.25
gb|CA921844.1|CA921844 EST639562 MTUS Medicago truncatula c... 42 0.25
gb|CA921875.1|CA921875 EST639593 MTUS Medicago truncatula c... 42 0.25
gb|AC165430.2| Medicago truncatula chromosome 2 clone mth2-... 42 0.25
gb|AC145218.29| Medicago truncatula clone mth2-34l18, compl... 42 0.25
>gb|CG930770.1|CG930770 MBEGT48TF mth2 Medicago truncatula genomic clone 52H24, DNA
sequence
Length = 529
Score = 71.9 bits (36), Expect = 3e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 607 actccgaagccatagacgtcagacttgactgaaaaaatgccttccattgcgtattcagga 666
||||| |||| | ||||||| || || ||||| |||| |||||||||||| |||||||||
Sbjct: 471 actccaaagctaaagacgtcggatttaactgagaaaaggccttccattgcatattcagga 412
Query: 667 gacatgtagcca 678
||||||||||||
Sbjct: 411 gacatgtagcca 400
Score = 52.0 bits (26), Expect = 3e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgt 769
||||| ||||| |||||||||||||||||||| || || |||||||
Sbjct: 244 ccaaatatcctagccattccaaaatctgatattttaggattcatgt 199
>gb|CG947079.1|CG947079 MBENK54TR mth2 Medicago truncatula genomic clone 8J11, DNA sequence
Length = 885
Score = 71.9 bits (36), Expect = 3e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 607 actccgaagccatagacgtcagacttgactgaaaaaatgccttccattgcgtattcagga 666
||||| |||| | ||||||| || || ||||| |||| |||||||||||| |||||||||
Sbjct: 530 actccaaagctaaagacgtcggatttaactgagaaaaggccttccattgcatattcagga 471
Query: 667 gacatgtagcca 678
||||||||||||
Sbjct: 470 gacatgtagcca 459
Score = 52.0 bits (26), Expect = 3e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgt 769
||||| ||||| |||||||||||||||||||| || || |||||||
Sbjct: 303 ccaaatatcctagccattccaaaatctgatattttaggattcatgt 258
>gb|CX521592.1|CX521592 s13dNF1LH10VI092_468988 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 626
Score = 65.9 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 733 cttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||| ||||||||||| ||||| | |||||||| |||| ||||||||||||||
Sbjct: 123 cttgccatgccaaaatctgaaatcttagcattcatgtcttcgtctaggagaatgttgctt 64
Query: 793 gccttgagatcacggtg 809
|| |||||||| |||||
Sbjct: 63 gctttgagatcgcggtg 47
>emb|CT571262.1| Medicago truncatula chromosome 5 clone mth2-35p15, WORKING DRAFT
SEQUENCE
Length = 105525
Score = 65.9 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 733 cttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||| ||||||||||| ||||| | |||||||| |||| ||||||||||||||
Sbjct: 53045 cttgccatgccaaaatctgaaatcttagcattcatgtcttcgtctaggagaatgttgctt 52986
Query: 793 gccttgagatcacggtg 809
|| |||||||| |||||
Sbjct: 52985 gctttgagatcgcggtg 52969
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 733 cttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||| |||||||||| |||||| | |||||||| | || | ||||||||||||
Sbjct: 84064 cttgccatgccaaaatctgctatcttagcattcatgtctccatctaagagaatgttgctt 84005
Query: 793 gccttgagatcacggtg 809
|| || |||||||||||
Sbjct: 84004 gctttaagatcacggtg 83988
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 733 cttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||| ||||||||||| ||||| | |||| ||| |||| | ||||||||||||
Sbjct: 38475 cttgccatgccaaaatctgagatcttagcattcacgtcttcgtctaagagaatgttgctt 38416
Query: 793 gccttgagatcacggtg 809
|| |||||||| |||||
Sbjct: 38415 gctttgagatcgcggtg 38399
>emb|CR333063.1| mte1-62D12RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 596
Score = 56.0 bits (28), Expect = 2e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1041 gacctcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttcacagc 1100
||||||||||||||||||||| | ||||||||| ||| | || | ||||||||||||||
Sbjct: 90 gacctcattcttgaattcttctatgccttgaccagaacttcttgatagcctcttcacagc 149
>gb|BE320606.2|BE320606 NF034H12RT1F1096 Developing root Medicago truncatula cDNA clone
NF034H12RT 5', mRNA sequence
Length = 466
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1040 tgacctcattcttgaattcttcaaggccttgacctgaatt 1079
||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 289 tgacctcattcttgaattcatcaacgccttgaccggaatt 250
>gb|AW687052.2|AW687052 NF005E02RT1F1017 Developing root Medicago truncatula cDNA clone
NF005E02RT 5', mRNA sequence
Length = 586
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 631 ttgactgaaaaaatgccttccattgcgtattcaggagacatgtagccaaatgtacc 686
|||||||||| | ||||||||| ||||||||||||||||| || ||| |||||||
Sbjct: 228 ttgactgaaactaggccttccatagcgtattcaggagacatataaccatatgtacc 173
>gb|BG581347.1|BG581347 EST483080 GVN Medicago truncatula cDNA clone pGVN-64H23 5' end, mRNA
sequence
Length = 826
Score = 56.0 bits (28), Expect = 2e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 1041 gacctcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttcacagc 1100
||||||||||||||||||||| | ||||||||| ||| | || | ||||||||||||||
Sbjct: 519 gacctcattcttgaattcttctatgccttgaccagaacttcttgatagcctcttcacagc 460
>gb|AC161403.1| Medicago truncatula chromosome 2 clone mth2-16e5, *** SEQUENCING IN
PROGRESS ***, 4 ordered pieces
Length = 113250
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1040 tgacctcattcttgaattcttcaaggccttgacctgaatt 1079
||||||||||||||||||| |||| ||||||||| |||||
Sbjct: 45178 tgacctcattcttgaattcatcaacgccttgaccggaatt 45217
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1132 tagacaggaccaaatcctccttctccaagcttgtt 1166
||||||||||||||||| |||| ||||||||||||
Sbjct: 106866 tagacaggaccaaatcccccttgtccaagcttgtt 106900
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 625 tcagacttgactgaaaaaatgccttccattgcgtattcaggagacat 671
||||| ||||||||||| | || |||||||||||||| ||||||||
Sbjct: 105983 tcagatttgactgaaaatagaccctccattgcgtattctggagacat 106029
Score = 44.1 bits (22), Expect = 0.063
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 722 ctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccagga 781
||||||| || || ||||| ||||||||||| || ||||| ||||| || || || ||||
Sbjct: 40666 ctccaaatattctagccataccaaaatctgagattttgggattcatttcagcatcaagga 40725
Query: 782 gaatgttgctggccttgagatc 803
||| |||||||| || |||||
Sbjct: 40726 gaacattgctggcttttagatc 40747
Score = 44.1 bits (22), Expect = 0.063
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 722 ctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccagga 781
||||||| || || ||||| ||||||||||| || ||||| ||||| | || || ||||
Sbjct: 34894 ctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgagga 34953
Query: 782 gaatgttgctggccttgagatc 803
||| ||||||||| || |||||
Sbjct: 34954 gaacgttgctggcttttagatc 34975
Score = 44.1 bits (22), Expect = 0.063
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 722 ctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccagga 781
||||||| || || ||||| ||||||||||| || ||||| ||||| | ||||| ||||
Sbjct: 3934 ctccaaatattctagccataccaaaatctgagattttgggattcattgcagcgtcaagga 3993
Query: 782 gaatgttgctggccttgagatc 803
||| |||||||| || |||||
Sbjct: 3994 gaacattgctggcttttagatc 4015
>gb|AC175028.4| Medicago truncatula clone mth2-7e22, WORKING DRAFT SEQUENCE, 37
unordered pieces
Length = 208388
Score = 56.0 bits (28), Expect = 2e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 1041 gacctcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttcacagc 1100
||||||||||||||||||||| | ||||||||| ||| | || | ||||||||||||||
Sbjct: 63856 gacctcattcttgaattcttctatgccttgaccagaacttcttgatagcctcttcacagc 63797
>gb|CG950365.1|CG950365 MBEIQ05TR mth2 Medicago truncatula genomic clone 64A9, DNA sequence
Length = 911
Score = 54.0 bits (27), Expect = 7e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 930 atctagacttttgttaggcatgtactcatacaccaggatcttctcttccctcggtatgca 989
||||| ||| || ||||||||||||||||| |||| ||||| || |||| |||||
Sbjct: 93 atctaaactgttattaggcatgtactcatagaccaacatcttttcgtccccttcaatgca 34
Query: 990 gcaccctagtagtcttacaagattgcg 1016
||| ||||| |||||||||||||||||
Sbjct: 33 gcaacctagaagtcttacaagattgcg 7
>gb|AC149642.2| Medicago truncatula chromosome 2 BAC clone mth2-62p11, complete
sequence
Length = 95165
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1132 tagacaggaccaaatcctccttctccaagcttgtt 1166
||||||||||||||||| |||| ||||||||||||
Sbjct: 60638 tagacaggaccaaatcccccttgtccaagcttgtt 60604
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 625 tcagacttgactgaaaaaatgccttccattgcgtattcaggagacat 671
||||| ||||||||||| | || |||||||||||||| ||||||||
Sbjct: 61521 tcagatttgactgaaaatagaccctccattgcgtattctggagacat 61475
>gb|AC144721.18| Medicago truncatula clone mth2-11o23, complete sequence
Length = 135959
Score = 54.0 bits (27), Expect = 7e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 918 aaagaggaatgcatctagacttttgttaggcatgtactcatacacca 964
||||||||||||||| | ||||||||| |||||| ||||||| ||||
Sbjct: 25073 aaagaggaatgcatccaaacttttgtttggcatgaactcataaacca 25119
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 918 aaagaggaatgcatctagacttttgttaggcatgtactcatacacca 964
||||||||||||||| | |||||| || |||||| ||||||| ||||
Sbjct: 32946 aaagaggaatgcatccaaacttttatttggcatgaactcataaacca 32992
>gb|CG935622.1|CG935622 MBEDL91TRC mth2 Medicago truncatula genomic clone 32P14, DNA sequence
Length = 856
Score = 52.0 bits (26), Expect = 3e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 943 ttaggcatgtactcatacaccaggatcttctcttccctcggtatgcagcaccctagtagt 1002
||||||||||||||||| |||| ||||| || |||| |||||||| ||||| |||
Sbjct: 848 ttaggcatgtactcatagaccaacatcttttcgtccccttcaatgcagcaacctagaagt 789
Query: 1003 cttacaagattgcg 1016
||||||||||||||
Sbjct: 788 cttacaagattgcg 775
>gb|CG947070.1|CG947070 MBEEU27TRB mth2 Medicago truncatula genomic clone 41E5, DNA
sequence
Length = 917
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 646 ccttccattgcgtattcaggagacatgtagcca 678
|||| |||||| |||||||||||||||||||||
Sbjct: 739 ccttgcattgcatattcaggagacatgtagcca 707
>emb|CR487121.1| mth2-139F18RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 881
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1135 acaggaccaaatcctccttctccaa 1159
|||||||||||||||||||||||||
Sbjct: 205 acaggaccaaatcctccttctccaa 181
>emb|CR967679.1| mth4-36K19FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 194
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 635 ctgaaaaaatgccttccattgcgtattcaggagacat 671
||||||||| |||| |||||||||||||||||||||
Sbjct: 70 ctgaaaaaagtccttgcattgcgtattcaggagacat 106
>gb|BQ149583.1|BQ149583 NF106B01FL1F1013 Developing flower Medicago truncatula cDNA clone
NF106B01FL 5', mRNA sequence
Length = 615
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1135 acaggaccaaatcctccttctccaa 1159
|||||||||||||||||||||||||
Sbjct: 383 acaggaccaaatcctccttctccaa 359
>emb|CT573216.1| Medicago truncatula chromosome 5 clone mte1-79f1, COMPLETE SEQUENCE
Length = 117869
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 943 ttaggcatgtactcatacaccaggatcttctct 975
|||||||| |||||||||||||| |||||||||
Sbjct: 24630 ttaggcatatactcatacaccagaatcttctct 24662
>gb|CG941740.1|CG941740 MBELF33TR mth2 Medicago truncatula genomic clone 79E18, DNA
sequence
Length = 935
Score = 48.1 bits (24), Expect = 0.004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 713 tttggtcccctccaaacatccttgccattccaaaatctga 752
||||||| |||||| ||||||| ||||| |||||||||||
Sbjct: 661 tttggtcacctccacacatcctagccatgccaaaatctga 622
>emb|CR331264.1| mte1-60G20RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 549
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 651 cattgcgtattcaggagacatgtagcca 678
||||||||||||||||||||| ||||||
Sbjct: 467 cattgcgtattcaggagacatatagcca 494
>emb|CR501997.1| mth2-179A9RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 519
Score = 48.1 bits (24), Expect = 0.004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 713 tttggtcccctccaaacatccttgccattccaaaatctga 752
||||||| |||||| ||||||| ||||| |||||||||||
Sbjct: 413 tttggtcacctccacacatcctagccatgccaaaatctga 452
>emb|CR504186.1| mth2-182K22FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 344
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 651 cattgcgtattcaggagacatgtagcca 678
||||||||||||||||||||| ||||||
Sbjct: 57 cattgcgtattcaggagacatatagcca 84
>emb|CR504831.1| mth4-1M22RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 726
Score = 48.1 bits (24), Expect = 0.004
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 732 ccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgct 791
||||||||| |||||||| | |||||| || ||||| || | |||| |||||| |||||
Sbjct: 241 ccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgct 182
Query: 792 ggccttgagatcacggtgaa 811
|| ||||||||||| ||||
Sbjct: 181 tgctttgagatcacgatgaa 162
>emb|CR302526.1| mte1-21C11RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 555
Score = 48.1 bits (24), Expect = 0.004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 713 tttggtcccctccaaacatccttgccattccaaaatctga 752
||||||| |||||| ||||||| ||||| |||||||||||
Sbjct: 137 tttggtcacctccacacatcctagccatgccaaaatctga 98
>gb|CA921373.1|CA921373 EST639091 MTUS Medicago truncatula cDNA clone MTUS-39F1, mRNA
sequence
Length = 779
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 651 cattgcgtattcaggagacatgtagcca 678
||||||||||||||||||||| ||||||
Sbjct: 749 cattgcgtattcaggagacatatagcca 776
>gb|AC144476.11| Medicago truncatula clone mth2-10a6, complete sequence
Length = 119355
Score = 48.1 bits (24), Expect = 0.004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 732 ccttgccattccaaaatctgatatcttgggtttcat 767
|||||||| ||||||||||||||| ||||| |||||
Sbjct: 17831 ccttgccaatccaaaatctgatattttgggattcat 17866
>gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete sequence
Length = 145002
Score = 48.1 bits (24), Expect = 0.004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 713 tttggtcccctccaaacatccttgccattccaaaatctga 752
||||||| |||||| ||||||| ||||| |||||||||||
Sbjct: 15708 tttggtcacctccacacatcctagccatgccaaaatctga 15669
>gb|AC140024.7| Medicago truncatula clone mth2-5f21, WORKING DRAFT SEQUENCE
Length = 118802
Score = 48.1 bits (24), Expect = 0.004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 607 actccgaagccatagacgtcagacttgactgaaaaaatgccttccattgcgtattcagga 666
||||| |||| ||| || |||||||| |||| |||| ||||||||||| ||||| |||
Sbjct: 48688 actccaaagctataaacatcagactttgttgaacaaattccttccattgcatattctgga 48629
Query: 667 gacatgta 674
||||||||
Sbjct: 48628 gacatgta 48621
>emb|CR962125.1| Medicago truncatula chromosome 5 clone mth2-179a9, WORKING DRAFT SEQUENCE
Length = 113972
Score = 48.1 bits (24), Expect = 0.004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 713 tttggtcccctccaaacatccttgccattccaaaatctga 752
||||||| |||||| ||||||| ||||| |||||||||||
Sbjct: 113561 tttggtcacctccacacatcctagccatgccaaaatctga 113522
>gb|AC174147.6| Medicago truncatula clone mth2-75g18, WORKING DRAFT SEQUENCE
Length = 128741
Score = 48.1 bits (24), Expect = 0.004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 732 ccttgccattccaaaatctgatatcttgggtttcat 767
|||||||| ||||||||||||||| ||||| |||||
Sbjct: 58397 ccttgccaatccaaaatctgatattttgggattcat 58432
>gb|CG922231.1|CG922231 MBEGW28TF mth2 Medicago truncatula genomic clone 53F7, DNA sequence
Length = 678
Score = 46.1 bits (23), Expect = 0.016
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 625 tcagacttgactgaaaaaatgccttccattgcgtattcaggagacat 671
||||| ||||||||||| | || |||||||||||||| ||||||||
Sbjct: 260 tcagatttgactgaaaatagaccctccattgcgtattctggagacat 306
>emb|CR477868.1| mth2-187C24RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 377
Score = 46.1 bits (23), Expect = 0.016
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1038 tatgacctcattcttgaattctt 1060
|||||||||||||||||||||||
Sbjct: 360 tatgacctcattcttgaattctt 338
>gb|AC148470.13| Medicago truncatula clone mth2-12e8, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 115441
Score = 46.1 bits (23), Expect = 0.016
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1138 ggaccaaatcctccttctccaagcttg 1164
|||||||||||||||||||||| ||||
Sbjct: 17459 ggaccaaatcctccttctccaatcttg 17485
Score = 46.1 bits (23), Expect = 0.016
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1138 ggaccaaatcctccttctccaagcttg 1164
|||||||||||||||||||||| ||||
Sbjct: 8686 ggaccaaatcctccttctccaatcttg 8660
>gb|AC157978.25| Medicago truncatula clone mth2-47l16, complete sequence
Length = 125021
Score = 46.1 bits (23), Expect = 0.016
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 733 cttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctg 792
|||||||| |||||||| |||||||| || ||||| || | || | ||||||||| ||
Sbjct: 114583 cttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttactt 114642
Query: 793 gccttgagatcacggtgaa 811
|| ||||||||||| ||||
Sbjct: 114643 gctttgagatcacgatgaa 114661
>gb|AC148470.14| Medicago truncatula clone mth2-12e8, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 115441
Score = 46.1 bits (23), Expect = 0.016
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1138 ggaccaaatcctccttctccaagcttg 1164
|||||||||||||||||||||| ||||
Sbjct: 17459 ggaccaaatcctccttctccaatcttg 17485
Score = 46.1 bits (23), Expect = 0.016
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1138 ggaccaaatcctccttctccaagcttg 1164
|||||||||||||||||||||| ||||
Sbjct: 8686 ggaccaaatcctccttctccaatcttg 8660
>gb|CG930477.1|CG930477 MBEME60TF mth2 Medicago truncatula genomic clone 1I23, DNA sequence
Length = 853
Score = 44.1 bits (22), Expect = 0.063
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 722 ctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccagga 781
||||||| || || ||||| ||||||||||| || ||||| ||||| | || || ||||
Sbjct: 535 ctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgagga 476
Query: 782 gaatgttgctggccttgagatc 803
||| ||||||||| || |||||
Sbjct: 475 gaacgttgctggcttttagatc 454
>emb|CR296212.1| mte1-12H10RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.063
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 730 atccttgccattccaaaatctgatat 755
||||| ||||||||||||||||||||
Sbjct: 120 atcctagccattccaaaatctgatat 95
>gb|CX539359.1|CX539359 s13dNF70A12GS085_461978 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 514
Score = 44.1 bits (22), Expect = 0.063
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 722 ctccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccagga 781
||||||| || || ||||| ||||||||||| || ||||| ||||| | || || ||||
Sbjct: 382 ctccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcgagga 323
Query: 782 gaatgttgctggccttgagatc 803
||| ||||||||| || |||||
Sbjct: 322 gaacgttgctggcttttagatc 301
>gb|AC123975.16| Medicago truncatula clone mth2-12m13, complete sequence
Length = 121884
Score = 44.1 bits (22), Expect = 0.063
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 726 aaacatccttgccattccaaaatctgatat 755
||||||||| ||||| ||||||||||||||
Sbjct: 67014 aaacatcctcgccataccaaaatctgatat 66985
>gb|CG940055.1|CG940055 MBEES52TR mth2 Medicago truncatula genomic clone 40J7, DNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.25
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 609 tccgaagccatagacgtcagacttgactgaaaa 641
|||||||| ||| ||||||||||| ||||||||
Sbjct: 603 tccgaagctataaacgtcagacttcactgaaaa 571
>gb|CG940972.1|CG940972 MBEDT69TFC mth2 Medicago truncatula genomic clone 34L18, DNA sequence
Length = 828
Score = 42.1 bits (21), Expect = 0.25
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1130 tatagacaggaccaaatcctccttctccaagcttgtt 1166
|||||||||| ||| | ||||||| ||||||||||||
Sbjct: 350 tatagacagggccataacctccttgtccaagcttgtt 314
>emb|CR488631.1| mth2-157L8FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 707
Score = 42.1 bits (21), Expect = 0.25
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 618 atagacgtcagacttgactgaaaaaatgccttccattgcgtattcaggagacatgta 674
||||||||||||||| |||| | || |||||||| || ||||| |||||||||||
Sbjct: 135 atagacgtcagactttgttgaacatattccttccatggcatattctggagacatgta 79
>emb|CR502622.1| mth2-179L20FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 787
Score = 42.1 bits (21), Expect = 0.25
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1135 acaggaccaaatcctccttctccaa 1159
||||||||||| |||||||||||||
Sbjct: 654 acaggaccaaaccctccttctccaa 678
>emb|CR512612.1| mth4-37E16FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.25
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1130 tatagacaggaccaaatcctccttctccaagcttgtt 1166
|||||||||| ||| | ||||||| ||||||||||||
Sbjct: 350 tatagacagggccataacctccttgtccaagcttgtt 314
>gb|BE942879.1|BE942879 EST422458 MGHG Medicago truncatula cDNA clone pMGHG-9J10, mRNA
sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.25
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 607 actccgaagccatagacgtcagacttgactgaaaaaatgccttccattgcgtattcagga 666
||||| |||| ||||||||||||||| ||| ||| |||||||| || ||||| |||
Sbjct: 441 actccaaagctatagacgtcagactttgtagaacaaactccttccatggcatattctgga 382
Query: 667 gacatgtagccaaatgt 683
|||||||| ||| ||||
Sbjct: 381 gacatgtatccatatgt 365
>gb|CA921844.1|CA921844 EST639562 MTUS Medicago truncatula cDNA clone MTUS-45B4, mRNA
sequence
Length = 819
Score = 42.1 bits (21), Expect = 0.25
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 607 actccgaagccatagacgtcagacttgactgaaaaaatgccttccattgcgtattcagga 666
||||| |||| ||||||||||||||| ||| ||| |||||||| || ||||| |||
Sbjct: 478 actccaaagctatagacgtcagactttgtagaacaaactccttccatggcatattctgga 537
Query: 667 gacatgtagccaaatgt 683
|||||||| ||| ||||
Sbjct: 538 gacatgtatccatatgt 554
>gb|CA921875.1|CA921875 EST639593 MTUS Medicago truncatula cDNA clone MTUS-45E5, mRNA
sequence
Length = 725
Score = 42.1 bits (21), Expect = 0.25
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 607 actccgaagccatagacgtcagacttgactgaaaaaatgccttccattgcgtattcagga 666
||||| |||| ||||||||||||||| ||| ||| |||||||| || ||||| |||
Sbjct: 476 actccaaagctatagacgtcagactttgtagaacaaactccttccatggcatattctgga 535
Query: 667 gacatgtagccaaatgt 683
|||||||| ||| ||||
Sbjct: 536 gacatgtatccatatgt 552
>gb|AC165430.2| Medicago truncatula chromosome 2 clone mth2-67a21, *** SEQUENCING IN
PROGRESS ***, 4 ordered pieces
Length = 114251
Score = 42.1 bits (21), Expect = 0.25
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1130 tatagacaggaccaaatcctccttctccaagcttgtt 1166
|||||||||| ||| | ||||||| ||||||||||||
Sbjct: 4354 tatagacagggccataacctccttgtccaagcttgtt 4390
>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence
Length = 134519
Score = 42.1 bits (21), Expect = 0.25
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1130 tatagacaggaccaaatcctccttctccaagcttgtt 1166
|||||||||| ||| | ||||||| ||||||||||||
Sbjct: 134177 tatagacagggccataacctccttgtccaagcttgtt 134213
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 588,275
Number of Sequences: 392609
Number of extensions: 588275
Number of successful extensions: 44005
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 43654
Number of HSP's gapped (non-prelim): 350
length of query: 2766
length of database: 441,732,993
effective HSP length: 21
effective length of query: 2745
effective length of database: 433,488,204
effective search space: 1189925119980
effective search space used: 1189925119980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)