BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750912.2.1
(1095 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX534173.1|CX534173 s13dNF0TC01MJ002_322105 Methyl Jasmo... 147 2e-033
gb|BI308096.1|BI308096 EST529506 GPOD Medicago truncatula c... 125 8e-027
gb|CX526327.1|CX526327 s13dNF34F09AT079_510398 Aphid-Infect... 119 5e-025
gb|AW689134.1|AW689134 NF015G05ST1F1000 Developing stem Med... 113 3e-023
gb|CX527554.1|CX527554 s13dNF43H03AT032_515620 Aphid-Infect... 100 5e-019
gb|AC126794.15| Medicago truncatula clone mth2-24j7, comple... 72 1e-010
gb|CA917532.1|CA917532 EST641679 GPOD Medicago truncatula c... 60 4e-007
gb|CX540580.1|CX540580 s13dNF0CC09GS070_464436 Germinating ... 60 4e-007
gb|AW690130.1|AW690130 NF028B12ST1F1000 Developing stem Med... 44 0.025
gb|BG451672.1|BG451672 NF092H12DT1F1101 Drought Medicago tr... 44 0.025
gb|CX532799.1|CX532799 s13dNF71G04MJ024_271881 Methyl Jasmo... 44 0.025
gb|AC144478.20| Medicago truncatula clone mth2-20b20, compl... 44 0.025
gb|AC127428.38| Medicago truncatula clone mth2-36c19, WORKI... 44 0.025
emb|CR322267.1| mte1-49H3FM1 BAC end, cultivar Jemalong A17... 42 0.097
gb|BG448768.1|BG448768 NF044C12NR1F1087 Nodulated root Medi... 42 0.097
gb|BI271165.1|BI271165 NF051C11FL1F1086 Developing flower M... 42 0.097
gb|CX532605.1|CX532605 s13dNF88C12MJ086_271495 Methyl Jasmo... 42 0.097
gb|AC148097.7| Medicago truncatula clone mth2-15a20, comple... 42 0.097
gb|AC140551.8| Medicago truncatula clone mth2-80i8, complet... 42 0.097
emb|CR322331.1| mte1-49N9FM1 BAC end, cultivar Jemalong A17... 40 0.38
gb|AW684161.1|AW684161 NF013D03NR1F1000 Nodulated root Medi... 40 0.38
>gb|CX534173.1|CX534173 s13dNF0TC01MJ002_322105 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 580
Score = 147 bits (74), Expect = 2e-033
Identities = 299/374 (79%)
Strand = Plus / Plus
Query: 67 cagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgccttcatt 126
||||||||||||||||||||||||||||| || ||||| |||||||| || || || ||
Sbjct: 119 cagagtggttggagtgtttttgtcagttctaagaggctggttgctggggatgcatttata 178
Query: 127 ttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgaggcagttg 186
|| || ||||| || || || || |||||||||||||| ||||| || ||||| ||| |
Sbjct: 179 tttctgagaggtgagaatggggagcttcgagttggtgtcaggcgtgcaatgagacagcag 238
Query: 187 tctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgact 246
|||||| || || |||||||| |||||||| ||||||||||| || |||||||| |||
Sbjct: 239 ggtaatgttccatcctcggttatctctagccatagcatgcatcttggtgttcttgcaact 298
Query: 247 gcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcctaggacgagc 306
|| ||||| || || || | ||||||||||||| || ||||| || |||| ||
Sbjct: 299 gcctggcatgctgttttgactgggaccatgttcactgtttattacaaaccccggactagt 358
Query: 307 ccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaacaattattct 366
|| | |||||||| |||| ||||||||||| |||||||| ||||||| |||||| |
Sbjct: 359 ccagcggagtttattgttccgtatgatcaatacatggagtctctaaaaaataattataca 418
Query: 367 attgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcagaggtttact 426
|| || ||| | |||| ||||||||||| || |||||||| || ||||| ||||||||
Sbjct: 419 ataggcatgcggttcaaaatgaggtttgagggtgaagaggctcctgagcaaaggtttacg 478
Query: 427 ggtacaatagttgg 440
||||| || |||||
Sbjct: 479 ggtaccattgttgg 492
>gb|BI308096.1|BI308096 EST529506 GPOD Medicago truncatula cDNA clone pGPOD-2I13 5' end,
mRNA sequence
Length = 844
Score = 125 bits (63), Expect = 8e-027
Identities = 298/375 (79%), Gaps = 1/375 (0%)
Strand = Plus / Plus
Query: 67 cagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgccttcatt 126
||||||||||||||||||||||||||||| || ||||| |||||||| || || || ||
Sbjct: 380 cagagtggttggagtgtttttgtcagttctaagaggctggttgctggggatgcatttata 439
Query: 127 ttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgaggcagttg 186
|| || ||||| || || || || |||||||||||||| ||||| || ||||| ||| |
Sbjct: 440 tttctgagaggtgagaatggggagcttcgagttggtgtcaggcgtgcaatgagacagcag 499
Query: 187 tctaatgtaccttcttcggttatatctagccaaagcatg-catctcggggttcttgcgac 245
|||||| || || |||||||| |||||||| |||||| ||||| || |||||||| ||
Sbjct: 500 ggtaatgttccatcctcggttatctctagccatagcatgccatcttggtgttcttgcaac 559
Query: 246 tgcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcctaggacgag 305
||| ||||| || || || | ||||||||||||| || ||||| || |||| ||
Sbjct: 560 tgcctggcatgctgttttgactgggaccatgttcactgtttattacaaaccccggactag 619
Query: 306 cccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaacaattattc 365
|| | |||||||| |||| ||||||||||| |||||||| ||||||| |||||| |
Sbjct: 620 tccagcggagtttattgttccgtatgatcaatacatggagtctctaaaaaataattatac 679
Query: 366 tattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcagaggtttac 425
|| || ||| | |||| ||||||||||| || |||||||| | ||||| ||||||||
Sbjct: 680 aataggcatgcggttcaaaatgaggtttgagggtgaagaggcttctgagcaaaggtttac 739
Query: 426 tggtacaatagttgg 440
||||| || |||||
Sbjct: 740 gggtaccattgttgg 754
>gb|CX526327.1|CX526327 s13dNF34F09AT079_510398 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 630
Score = 119 bits (60), Expect = 5e-025
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 67 cagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgccttcatt 126
||||||||||||||||||||||||||||| || ||||| |||||||| || || || ||
Sbjct: 374 cagagtggttggagtgtttttgtcagttctaagaggctggttgctggggatgcatttata 433
Query: 127 ttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgaggcagttg 186
|| || ||||| || || || || |||||||||||||| ||||| || ||||| ||| |
Sbjct: 434 tttctgagaggtgagaatggggagcttcgagttggtgtcaggcgtgcaatgagacagcag 493
Query: 187 tctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgact 246
|||||| || || |||||||| |||||||| ||||||||||| || |||||||| |||
Sbjct: 494 ggtaatgttccatcctcggttatctctagccatagcatgcatcttggtgttcttgcaact 553
Query: 247 gcatggca 254
|| |||||
Sbjct: 554 gcctggca 561
>gb|AW689134.1|AW689134 NF015G05ST1F1000 Developing stem Medicago truncatula cDNA clone
NF015G05ST 5', mRNA sequence
Length = 623
Score = 113 bits (57), Expect = 3e-023
Identities = 298/376 (79%), Gaps = 2/376 (0%)
Strand = Plus / Plus
Query: 67 cagagtggttggagtgtttttgtcagttccaaaaggcttgttgc-tggagacgccttcat 125
||||||||||||||||||||||||||||| || ||||| ||||| ||| || || || ||
Sbjct: 22 cagagtggttggagtgtttttgtcagttctaagaggctggttgcctggggatgcatttat 81
Query: 126 tttcctcagaggagaaaacggtgaac-ttcgagttggtgttaggcgcgctatgaggcagt 184
|| || ||||| || || || || | ||||||||||||| ||||| || ||||| |||
Sbjct: 82 atttctgagaggtgagaatggggagccttcgagttggtgtcaggcgtgcaatgagacagc 141
Query: 185 tgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcga 244
| |||||| || || |||||||| |||||||| ||||||||||| || |||||||| |
Sbjct: 142 agggtaatgttccatcctcggttatctctagccatagcatgcatcttggtgttcttgcaa 201
Query: 245 ctgcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcctaggacga 304
|||| ||||| || || || | ||||||||||||| || ||||| || |||| |
Sbjct: 202 ctgcctggcatgctgttttgactgggaccatgttcactgtttattacaaaccccggacta 261
Query: 305 gcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaacaattatt 364
| || | |||||||| |||| ||||||||||| |||||||| ||||||| ||||||
Sbjct: 262 gtccagcggagtttattgttccgtatgatcaatacatggagtctctaaaaaataattata 321
Query: 365 ctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcagaggttta 424
| || || ||| | |||| ||||||||||| || ||| |||| || ||||| |||||||
Sbjct: 322 caataggcatgcggttcaaaatgaggtttgagggtgaanaggctcctgagcaaaggttta 381
Query: 425 ctggtacaatagttgg 440
| ||||| || |||||
Sbjct: 382 cgggtaccattgttgg 397
>gb|CX527554.1|CX527554 s13dNF43H03AT032_515620 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 610
Score = 99.6 bits (50), Expect = 5e-019
Identities = 230/290 (79%)
Strand = Plus / Plus
Query: 151 cttcgagttggtgttaggcgcgctatgaggcagttgtctaatgtaccttcttcggttata 210
|||||||||||||| ||||| || ||||| ||| | |||||| || || ||||||||
Sbjct: 14 cttcgagttggtgtcaggcgtgcaatgagacagcagggtaatgttccatcctcggttatc 73
Query: 211 tctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcgattaacacaaag 270
|||||||| ||||||||||| || |||||||| ||||| ||||| || || || |
Sbjct: 74 tctagccatagcatgcatcttggtgttcttgcaactgcctggcatgctgttttgactggg 133
Query: 271 tccatgttcactgtctactacaagcctaggacgagcccttcagagtttatcattccatat 330
||||||||||||| || ||||| || |||| || || | |||||||| |||| |||
Sbjct: 134 accatgttcactgtttattacaaaccccggactagtccagcggagtttattgttccgtat 193
Query: 331 gatcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatgagg 390
|||||||| |||||||| ||||||| |||||| | || || ||| | |||| ||||||
Sbjct: 194 gatcaatacatggagtctctaaaaaataattatacaataggcatgcggttcaaaatgagg 253
Query: 391 tttgaaggggaagaggcccccgagcagaggtttactggtacaatagttgg 440
||||| || |||||||| || ||||| |||||||| ||||| || |||||
Sbjct: 254 tttgagggtgaagaggctcctgagcaaaggtttacgggtaccattgttgg 303
>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence
Length = 129513
Score = 71.9 bits (36), Expect = 1e-010
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 151 cttcgagttggtgttaggcgcgctatgaggcagttgtctaatgtaccttcttcggttata 210
|||||||||||||| ||||| || ||||| ||| | |||||| || || ||||||||
Sbjct: 49246 cttcgagttggtgtcaggcgtgcaatgagacagcagggtaatgttccatcctcggttatc 49187
Query: 211 tctagccaaagcatgcatctcggggttcttgcgactgcatggca 254
|||||||| ||||||||||| || |||||||| ||||| |||||
Sbjct: 49186 tctagccatagcatgcatcttggtgttcttgcaactgcctggca 49143
Score = 69.9 bits (35), Expect = 4e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 67 cagagtggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 49415 cagagtggttggagtgtttttgtcagttctaagaggctggttgctgg 49369
Score = 58.0 bits (29), Expect = 2e-006
Identities = 89/109 (81%)
Strand = Plus / Minus
Query: 313 gagtttatcattccatatgatcaatatatggagtcagtaaaaaacaattattctattggg 372
|||||||| |||| ||||||||||| |||||||| ||||||| |||||| | || ||
Sbjct: 48961 gagtttattgttccgtatgatcaatacatggagtctctaaaaaataattatacaataggc 48902
Query: 373 atgagattcaggatgaggtttgaaggggaagaggcccccgagcagaggt 421
||| | |||| ||||||||||| || |||||||| || ||||| ||||
Sbjct: 48901 atgcggttcaaaatgaggtttgagggtgaagaggctcctgagcaaaggt 48853
>gb|CA917532.1|CA917532 EST641679 GPOD Medicago truncatula cDNA clone GPOD-36O22, mRNA
sequence
Length = 123
Score = 60.0 bits (30), Expect = 4e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 189 taatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgc 248
|||||| || || |||||||| |||||||| ||||||||||| || |||||||| |||||
Sbjct: 3 taatgttccatcctcggttatctctagccatagcatgcatcttggtgttcttgcaactgc 62
Query: 249 atggca 254
|||||
Sbjct: 63 ctggca 68
>gb|CX540580.1|CX540580 s13dNF0CC09GS070_464436 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 533
Score = 60.0 bits (30), Expect = 4e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 331 gatcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatgagg 390
|||||||| |||||||| ||||||| |||||| | || || ||| | |||| ||||||
Sbjct: 1 gatcaatacatggagtctctaaaaaataattatacaataggcatgcggttcaaaatgagg 60
Query: 391 tttgaaggggaagaggcccccgagcagaggtttactggtacaatagttgg 440
||||| || |||||||| || ||||| |||||||| ||||| || |||||
Sbjct: 61 tttgagggtgaagaggctcctgagcaaaggtttacgggtaccattgttgg 110
>gb|AW690130.1|AW690130 NF028B12ST1F1000 Developing stem Medicago truncatula cDNA clone
NF028B12ST 5', mRNA sequence
Length = 680
Score = 44.1 bits (22), Expect = 0.025
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||||||||| ||| | ||||| |||||||||||
Sbjct: 231 tggagtgtttttgtgagtgctaaaagacttgttgctgg 268
>gb|BG451672.1|BG451672 NF092H12DT1F1101 Drought Medicago truncatula cDNA clone NF092H12DT
5', mRNA sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.025
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||||||||| ||| | ||||| |||||||||||
Sbjct: 501 tggagtgtttttgtgagtgctaaaagacttgttgctgg 538
>gb|CX532799.1|CX532799 s13dNF71G04MJ024_271881 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 655
Score = 44.1 bits (22), Expect = 0.025
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||||||||| ||| | ||||| |||||||||||
Sbjct: 147 tggagtgtttttgtgagtgctaaaagacttgttgctgg 184
>gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete sequence
Length = 144248
Score = 44.1 bits (22), Expect = 0.025
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||||||||| ||| | ||||| |||||||||||
Sbjct: 57683 tggagtgtttttgtgagtgctaaaagacttgttgctgg 57720
>gb|AC127428.38| Medicago truncatula clone mth2-36c19, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 274828
Score = 44.1 bits (22), Expect = 0.025
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||||||||| ||| | ||||| |||||||||||
Sbjct: 224356 tggagtgtttttgtgagtgctaaaagacttgttgctgg 224319
>emb|CR322267.1| mte1-49H3FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 774
Score = 42.1 bits (21), Expect = 0.097
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 208 atatctagccaaagcatgcatctcggggttcttgcgactgc 248
||||| ||||||||||||||||| || || ||||| |||||
Sbjct: 426 atatcaagccaaagcatgcatcttggtgtgcttgctactgc 466
>gb|BG448768.1|BG448768 NF044C12NR1F1087 Nodulated root Medicago truncatula cDNA clone
NF044C12NR 5', mRNA sequence
Length = 671
Score = 42.1 bits (21), Expect = 0.097
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 73 ggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
||||||||||| ||||| ||| | ||||| |||||||||||
Sbjct: 590 ggttggagtgtctttgtgagtgctaaaagacttgttgctgg 630
>gb|BI271165.1|BI271165 NF051C11FL1F1086 Developing flower Medicago truncatula cDNA clone
NF051C11FL 5', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.097
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 385 atgaggtttgaaggggaagaggcccccgagcagaggtttac 425
||||||||||| || |||||||| || ||||| ||||||||
Sbjct: 34 atgaggtttgagggtgaagaggctcctgagcaaaggtttac 74
>gb|CX532605.1|CX532605 s13dNF88C12MJ086_271495 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.097
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 tggagtgtttttgtcagttccaaaa 100
|||||||| ||||||||||||||||
Sbjct: 538 tggagtgtctttgtcagttccaaaa 562
>gb|AC148097.7| Medicago truncatula clone mth2-15a20, complete sequence
Length = 125098
Score = 42.1 bits (21), Expect = 0.097
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 76 tggagtgtttttgtcagttccaaaa 100
|||||||| ||||||||||||||||
Sbjct: 42288 tggagtgtctttgtcagttccaaaa 42264
>gb|AC140551.8| Medicago truncatula clone mth2-80i8, complete sequence
Length = 135244
Score = 42.1 bits (21), Expect = 0.097
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 76 tggagtgtttttgtcagttccaaaa 100
|||||||| ||||||||||||||||
Sbjct: 42291 tggagtgtctttgtcagttccaaaa 42267
>emb|CR322331.1| mte1-49N9FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 845
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 476 gttggagatacttgaaggtg 495
||||||||||||||||||||
Sbjct: 134 gttggagatacttgaaggtg 115
>gb|AW684161.1|AW684161 NF013D03NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF013D03NR 5', mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 373 atgagattcaggatgaggtttgaa 396
||||| ||||||||||||||||||
Sbjct: 83 atgaggttcaggatgaggtttgaa 106
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 221,578
Number of Sequences: 392609
Number of extensions: 221578
Number of successful extensions: 16958
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16888
Number of HSP's gapped (non-prelim): 66
length of query: 1095
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1075
effective length of database: 433,880,813
effective search space: 466421873975
effective search space used: 466421873975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)