BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750663.2.1
(1282 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG924847.1|CG924847 MBENA07TR mth2 Medicago truncatula g... 46 0.007
>gb|CG924847.1|CG924847 MBENA07TR mth2 Medicago truncatula genomic clone 6A13, DNA sequence
Length = 852
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 887 agactcggcaaactgccgtgccgcatcgatgcaga 921
||||||||||||||||| ||| ||||| |||||||
Sbjct: 256 agactcggcaaactgccttgcggcatctatgcaga 222
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 210,537
Number of Sequences: 392609
Number of extensions: 210537
Number of successful extensions: 14280
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14279
Number of HSP's gapped (non-prelim): 1
length of query: 1282
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1262
effective length of database: 433,880,813
effective search space: 547557586006
effective search space used: 547557586006
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)