BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2750560.2.1
         (660 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BG644686.1|BG644686  EST506305 KV3 Medicago truncatula cD...    50   2e-004
gb|AW695486.1|AW695486  NF095D02ST1F1016 Developing stem Med...    40   0.23 
gb|CX532605.1|CX532605  s13dNF88C12MJ086_271495 Methyl Jasmo...    40   0.23 

>gb|BG644686.1|BG644686 EST506305 KV3 Medicago truncatula cDNA clone pKV3-38C5 5' end, mRNA
           sequence
          Length = 731

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 335 ggtttactacttcccacagggtcatatggaaca 367
           ||||||||| |||||||| ||||||||||||||
Sbjct: 263 ggtttactatttcccacaaggtcatatggaaca 295



>gb|AW695486.1|AW695486 NF095D02ST1F1016 Developing stem Medicago truncatula cDNA clone
           NF095D02ST 5', mRNA sequence
          Length = 480

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 342 tacttcccacagggtcatatggaacagcttgaagcatcta 381
           |||||||| || ||||| ||||||||||| || |||||||
Sbjct: 371 tacttccctcaaggtcacatggaacagctcgaggcatcta 410



>gb|CX532605.1|CX532605 s13dNF88C12MJ086_271495 Methyl Jasmonate-Elicited Root Cell
           Suspension Culture Medicago truncatula cDNA, mRNA
           sequence
          Length = 599

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 342 tacttcccacagggtcatatggaacagcttgaagcatcta 381
           |||||||| || ||||| ||||||||||| || |||||||
Sbjct: 88  tacttccctcaaggtcacatggaacagctcgaggcatcta 127



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 123,559
Number of Sequences: 392609
Number of extensions: 123559
Number of successful extensions: 23077
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23074
Number of HSP's gapped (non-prelim): 3
length of query: 660
length of database: 441,732,993
effective HSP length: 19
effective length of query: 641
effective length of database: 434,273,422
effective search space: 278369263502
effective search space used: 278369263502
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)