BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW208040.2|AW208040 M111071e DSIR Medicago truncatula cD... 60 4e-007
gb|BE187537.1|BE187537 EST336098 KV0 Medicago truncatula cD... 60 4e-007
gb|BE240666.1|BE240666 EST404715 MHRP- Medicago truncatula ... 46 0.007
gb|AW774759.1|AW774759 EST333910 KV3 Medicago truncatula cD... 44 0.027
gb|AW776886.1|AW776886 EST335951 DSIL Medicago truncatula c... 44 0.027
gb|BI265490.1|BI265490 NF083C01IN1F1006 Insect herbivory Me... 44 0.027
gb|BQ146869.1|BQ146869 NF029C08FL1F1065 Developing flower M... 44 0.027
gb|CX525170.1|CX525170 s13dNF20C07AT054_478974 Aphid-Infect... 44 0.027
gb|CX541914.1|CX541914 s13dNF0BE03GS023_467136 Germinating ... 44 0.027
gb|CG949562.1|CG949562 MBEBQ42TRB mth2 Medicago truncatula ... 40 0.42
gb|AC121237.19| Medicago truncatula clone mth2-22g11, compl... 40 0.42
gb|AC148446.2| Medicago truncatula chromosome 2 clone mth2-... 40 0.42
emb|CT485797.1| Medicago truncatula chromosome 5 clone mth4... 40 0.42
>gb|AW208040.2|AW208040 M111071e DSIR Medicago truncatula cDNA clone IR149, mRNA sequence
Length = 414
Score = 60.0 bits (30), Expect = 4e-007
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 960 tgatcacaacattgctgcaataaacaggatggat 993
||||||||||||| ||||||||||||||||||||
Sbjct: 47 tgatcacaacattactgcaataaacaggatggat 14
Score = 40.1 bits (20), Expect = 0.42
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 808 ggcgattccatactcatcccagccactcttgatggc 843
|||||||||||| | |||||| ||||| ||||||||
Sbjct: 199 ggcgattccatattgatcccaaccacttttgatggc 164
>gb|BE187537.1|BE187537 EST336098 KV0 Medicago truncatula cDNA clone pKV0-10I1, mRNA
sequence
Length = 587
Score = 60.0 bits (30), Expect = 4e-007
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 960 tgatcacaacattgctgcaataaacaggatggat 993
||||||||||||| ||||||||||||||||||||
Sbjct: 135 tgatcacaacattactgcaataaacaggatggat 102
Score = 40.1 bits (20), Expect = 0.42
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 808 ggcgattccatactcatcccagccactcttgatggc 843
|||||||||||| | |||||| ||||| ||||||||
Sbjct: 287 ggcgattccatattgatcccaaccacttttgatggc 252
>gb|BE240666.1|BE240666 EST404715 MHRP- Medicago truncatula cDNA clone pMHRP-47M14, mRNA
sequence
Length = 594
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 968 acattgctgcaataaacaggatggatg 994
|||||||||||||||||||| ||||||
Sbjct: 408 acattgctgcaataaacagggtggatg 382
>gb|AW774759.1|AW774759 EST333910 KV3 Medicago truncatula cDNA clone pKV3-23H22, mRNA
sequence
Length = 733
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1121 ccttaaccaccaatagttccattctcgcctgtgatgacaacatcctgaag 1170
|||| |||| |||| || |||||||| |||||||| || |||||||||||
Sbjct: 555 ccttgaccatcaattgtcccattctcacctgtgattactacatcctgaag 506
Score = 42.1 bits (21), Expect = 0.11
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 965 acaacattgctgcaataaacaggatggatgttccagaatggcgaatcct 1013
|||||||||||||| ||||| || || |||||||| || || |||||||
Sbjct: 711 acaacattgctgcagtaaactgggtgtatgttccaaaagggagaatcct 663
>gb|AW776886.1|AW776886 EST335951 DSIL Medicago truncatula cDNA clone pDSIL-16O6, mRNA
sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 965 acaacattgctgcaataaacaggatggatgttccagaa 1002
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 400 acaacattgctgcagtaaactggatgtatattccagaa 363
>gb|BI265490.1|BI265490 NF083C01IN1F1006 Insect herbivory Medicago truncatula cDNA clone
NF083C01IN 5', mRNA sequence
Length = 467
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 965 acaacattgctgcaataaacaggatggatgttccagaa 1002
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 226 acaacattgctgcagtaaactggatgtatattccagaa 189
>gb|BQ146869.1|BQ146869 NF029C08FL1F1065 Developing flower Medicago truncatula cDNA clone
NF029C08FL 5', mRNA sequence
Length = 574
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 965 acaacattgctgcaataaacaggatggatgttccagaa 1002
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 344 acaacattgctgcagtaaactggatgtatattccagaa 307
>gb|CX525170.1|CX525170 s13dNF20C07AT054_478974 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 554
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1121 ccttaaccaccaatagttccattctcgcctgtgatgacaacatcctgaag 1170
|||| |||| |||| || |||||||| |||||||| || |||||||||||
Sbjct: 544 ccttgaccatcaattgtcccattctcacctgtgattactacatcctgaag 495
>gb|CX541914.1|CX541914 s13dNF0BE03GS023_467136 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 586
Score = 44.1 bits (22), Expect = 0.027
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 965 acaacattgctgcaataaacaggatggatgttccagaa 1002
|||||||||||||| ||||| ||||| || ||||||||
Sbjct: 460 acaacattgctgcagtaaactggatgtatattccagaa 423
>gb|CG949562.1|CG949562 MBEBQ42TRB mth2 Medicago truncatula genomic clone 22G11, DNA
sequence
Length = 942
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 811 gattccatactcatcccagccact 834
|||||||||||||||||| |||||
Sbjct: 739 gattccatactcatcccatccact 762
>gb|AC121237.19| Medicago truncatula clone mth2-22g11, complete sequence
Length = 127731
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 811 gattccatactcatcccagccact 834
|||||||||||||||||| |||||
Sbjct: 8265 gattccatactcatcccatccact 8288
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 811 gattccatactcatcccagccact 834
|||||||||||||||||| |||||
Sbjct: 739 gattccatactcatcccatccact 762
>gb|AC148446.2| Medicago truncatula chromosome 2 clone mth2-58i9, *** SEQUENCING IN
PROGRESS ***, 11 unordered pieces
Length = 127336
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 811 gattccatactcatcccagccact 834
|||||||||||||||||| |||||
Sbjct: 92685 gattccatactcatcccatccact 92708
>emb|CT485797.1| Medicago truncatula chromosome 5 clone mth4-11a3, WORKING DRAFT SEQUENCE
Length = 213152
Score = 40.1 bits (20), Expect = 0.42
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 903 ctggatcaattccatccgtgttgggggagtca 934
|||||||||| ||||| || ||||||||||||
Sbjct: 140246 ctggatcaatgccatcagtattgggggagtca 140215
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 208,416
Number of Sequences: 392609
Number of extensions: 208416
Number of successful extensions: 13353
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13309
Number of HSP's gapped (non-prelim): 44
length of query: 1179
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1159
effective length of database: 433,880,813
effective search space: 502867862267
effective search space used: 502867862267
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)