BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2623051.2.1
         (991 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW683039.2|AW683039  NF006F02LF1F1025 Developing leaf Med...    42   0.088
gb|AC136839.19|  Medicago truncatula clone mth2-13n2, comple...    42   0.088

>gb|AW683039.2|AW683039 NF006F02LF1F1025 Developing leaf Medicago truncatula cDNA clone
           NF006F02LF 5', mRNA sequence
          Length = 384

 Score = 42.1 bits (21), Expect = 0.088
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 560 ttctcagacgacatgatcaccaccggaat 588
           ||||| ||||||||||||||||| |||||
Sbjct: 41  ttctccgacgacatgatcaccactggaat 13



>gb|AC136839.19| Medicago truncatula clone mth2-13n2, complete sequence
          Length = 122138

 Score = 42.1 bits (21), Expect = 0.088
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 560   ttctcagacgacatgatcaccaccggaat 588
             ||||| ||||||||||||||||| |||||
Sbjct: 14186 ttctccgacgacatgatcaccactggaat 14214



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,358
Number of Sequences: 392609
Number of extensions: 157358
Number of successful extensions: 12863
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12853
Number of HSP's gapped (non-prelim): 10
length of query: 991
length of database: 441,732,993
effective HSP length: 20
effective length of query: 971
effective length of database: 433,880,813
effective search space: 421298269423
effective search space used: 421298269423
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)