BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621963.2.1
(743 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW685642.1|AW685642 NF029G10NR1F1000 Nodulated root Medi... 40 0.26
gb|AW980766.1|AW980766 EST391919 GVN Medicago truncatula cD... 40 0.26
gb|BG589039.1|BG589039 EST490848 MHRP- Medicago truncatula ... 40 0.26
gb|BG645182.1|BG645182 EST506801 KV3 Medicago truncatula cD... 40 0.26
gb|BQ148936.1|BQ148936 NF084F09FL1F1079 Developing flower M... 40 0.26
gb|CA857931.1|CA857931 EST635186 GLSD Medicago truncatula c... 40 0.26
gb|CX531604.1|CX531604 s13dNF29F05MJ044_257154 Methyl Jasmo... 40 0.26
gb|CX541890.1|CX541890 s13dNF0BB05GS045_467088 Germinating ... 40 0.26
gb|AC127168.17| Medicago truncatula clone mth2-15m13, compl... 40 0.26
gb|AC151621.18| Medicago truncatula clone mth2-14p3, WORKIN... 40 0.26
>gb|AW685642.1|AW685642 NF029G10NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF029G10NR 5', mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 577 caccaccaccagccaacact 558
>gb|AW980766.1|AW980766 EST391919 GVN Medicago truncatula cDNA clone pGVN-58L11, mRNA
sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 638 caccaccaccagccaacact 619
>gb|BG589039.1|BG589039 EST490848 MHRP- Medicago truncatula cDNA clone pMHRP-59D5, mRNA
sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 128 caccaccaccagccaacact 109
>gb|BG645182.1|BG645182 EST506801 KV3 Medicago truncatula cDNA clone pKV3-39O22 5' end,
mRNA sequence
Length = 838
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 296 caccaccaccagccaacact 277
>gb|BQ148936.1|BQ148936 NF084F09FL1F1079 Developing flower Medicago truncatula cDNA clone
NF084F09FL 5', mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 168 caccaccaccagccaacact 149
>gb|CA857931.1|CA857931 EST635186 GLSD Medicago truncatula cDNA clone pGLSD-26B23, mRNA
sequence
Length = 812
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 292 caccaccaccagccaacact 273
>gb|CX531604.1|CX531604 s13dNF29F05MJ044_257154 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 35 caccaccaccagccaacact 16
>gb|CX541890.1|CX541890 s13dNF0BB05GS045_467088 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 263 caccaccaccagccaacact 244
>gb|AC127168.17| Medicago truncatula clone mth2-15m13, complete sequence
Length = 117770
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 105739 caccaccaccagccaacact 105720
>gb|AC151621.18| Medicago truncatula clone mth2-14p3, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 126781
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 386 caccaccaccagccaacact 405
||||||||||||||||||||
Sbjct: 95917 caccaccaccagccaacact 95936
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,152
Number of Sequences: 392609
Number of extensions: 131152
Number of successful extensions: 10015
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9999
Number of HSP's gapped (non-prelim): 16
length of query: 743
length of database: 441,732,993
effective HSP length: 19
effective length of query: 724
effective length of database: 434,273,422
effective search space: 314413957528
effective search space used: 314413957528
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)