BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2619325.2.1
         (1403 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL312038.1|CL312038  mth2-124G03_T7 Medicago truncatula B...    42   0.13 
gb|AC157984.17|  Medicago truncatula clone mth2-142a1, compl...    42   0.13 
gb|AJ845422.1|AJ845422  AJ845422 MtSNF Medicago truncatula c...    40   0.50 
>gb|CL312038.1|CL312038 mth2-124G03_T7 Medicago truncatula BAC end sequences Medicago
            truncatula genomic 5', DNA sequence
          Length = 570

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1328 ctatatttggattataaaataaagttgaa 1356
            |||| ||||||| ||||||||||||||||
Sbjct: 220  ctatgtttggatcataaaataaagttgaa 192
>gb|AC157984.17| Medicago truncatula clone mth2-142a1, complete sequence
          Length = 122915

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 1328   ctatatttggattataaaataaagt 1352
              |||||||||| ||||||||||||||
Sbjct: 122331 ctatatttggtttataaaataaagt 122307
>gb|AJ845422.1|AJ845422 AJ845422 MtSNF Medicago truncatula cDNA clone MtNF04B16N1, mRNA
            sequence
          Length = 292

 Score = 40.1 bits (20), Expect = 0.50
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1116 agaccttcagaaaaagaaaa 1135
            ||||||||||||||||||||
Sbjct: 208  agaccttcagaaaaagaaaa 227
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 286,674
Number of Sequences: 392609
Number of extensions: 286674
Number of successful extensions: 23052
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23043
Number of HSP's gapped (non-prelim): 9
length of query: 1403
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1383
effective length of database: 433,880,813
effective search space: 600057164379
effective search space used: 600057164379
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)