BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619325.2.1
(1403 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL312038.1|CL312038 mth2-124G03_T7 Medicago truncatula B... 42 0.13
gb|AC157984.17| Medicago truncatula clone mth2-142a1, compl... 42 0.13
gb|AJ845422.1|AJ845422 AJ845422 MtSNF Medicago truncatula c... 40 0.50
>gb|CL312038.1|CL312038 mth2-124G03_T7 Medicago truncatula BAC end sequences Medicago
truncatula genomic 5', DNA sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1328 ctatatttggattataaaataaagttgaa 1356
|||| ||||||| ||||||||||||||||
Sbjct: 220 ctatgtttggatcataaaataaagttgaa 192
>gb|AC157984.17| Medicago truncatula clone mth2-142a1, complete sequence
Length = 122915
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1328 ctatatttggattataaaataaagt 1352
|||||||||| ||||||||||||||
Sbjct: 122331 ctatatttggtttataaaataaagt 122307
>gb|AJ845422.1|AJ845422 AJ845422 MtSNF Medicago truncatula cDNA clone MtNF04B16N1, mRNA
sequence
Length = 292
Score = 40.1 bits (20), Expect = 0.50
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1116 agaccttcagaaaaagaaaa 1135
||||||||||||||||||||
Sbjct: 208 agaccttcagaaaaagaaaa 227
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 286,674
Number of Sequences: 392609
Number of extensions: 286674
Number of successful extensions: 23052
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23043
Number of HSP's gapped (non-prelim): 9
length of query: 1403
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1383
effective length of database: 433,880,813
effective search space: 600057164379
effective search space used: 600057164379
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)