BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2618988.2.1
         (631 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR346752.1|  mte1-80G10RM1 BAC end, cultivar Jemalong A1...    40   0.22 
gb|AC124964.17|  Medicago truncatula clone mth2-27c4, comple...    40   0.22 
gb|AC135605.25|  Medicago truncatula clone mth2-7m1, complet...    40   0.22 

>emb|CR346752.1| mte1-80G10RM1 BAC end, cultivar Jemalong A17 of Medicago
          truncatula, genomic survey sequence
          Length = 593

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 61 tgaaaaatacatgaatatat 80
          ||||||||||||||||||||
Sbjct: 55 tgaaaaatacatgaatatat 74



>gb|AC124964.17| Medicago truncatula clone mth2-27c4, complete sequence
          Length = 114519

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tgaaaaatacatgaatatat 80
             ||||||||||||||||||||
Sbjct: 15431 tgaaaaatacatgaatatat 15450



>gb|AC135605.25| Medicago truncatula clone mth2-7m1, complete sequence
          Length = 121648

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     tgaaaaatacatgaatatat 80
              ||||||||||||||||||||
Sbjct: 104457 tgaaaaatacatgaatatat 104438



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 95,829
Number of Sequences: 392609
Number of extensions: 95829
Number of successful extensions: 7437
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7428
Number of HSP's gapped (non-prelim): 9
length of query: 631
length of database: 441,732,993
effective HSP length: 19
effective length of query: 612
effective length of database: 434,273,422
effective search space: 265775334264
effective search space used: 265775334264
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)