BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2591194.2.1
         (591 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BQ158045.1|BQ158045  NF018C03PL1F1019 Phosphate starved l...    40   0.21 

>gb|BQ158045.1|BQ158045 NF018C03PL1F1019 Phosphate starved leaf Medicago truncatula cDNA
           clone NF018C03PL 5', mRNA sequence
          Length = 1093

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 aattgctaaataatatatga 189
           ||||||||||||||||||||
Sbjct: 636 aattgctaaataatatatga 617



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,093
Number of Sequences: 392609
Number of extensions: 136093
Number of successful extensions: 10897
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10896
Number of HSP's gapped (non-prelim): 1
length of query: 591
length of database: 441,732,993
effective HSP length: 19
effective length of query: 572
effective length of database: 434,273,422
effective search space: 248404397384
effective search space used: 248404397384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)