BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2576887.2.1
         (1138 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC149207.3|  Medicago truncatula chromosome 2 BAC clone m...    42   0.10 
gb|AC159124.12|  Medicago truncatula clone mth2-172h20, WORK...    42   0.10 

>gb|AC149207.3| Medicago truncatula chromosome 2 BAC clone mte1-60l24, complete
             sequence
          Length = 107210

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 445   cacgagtgggagaaacatggaacctgctc 473
             |||||||||  ||||||||||||||||||
Sbjct: 22423 cacgagtggaggaaacatggaacctgctc 22395



>gb|AC159124.12| Medicago truncatula clone mth2-172h20, WORKING DRAFT SEQUENCE, 2 ordered
              pieces
          Length = 117155

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 445    cacgagtgggagaaacatggaacctgctc 473
              |||||||||  ||||||||||||||||||
Sbjct: 114292 cacgagtggaggaaacatggaacctgctc 114320



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 234,772
Number of Sequences: 392609
Number of extensions: 234772
Number of successful extensions: 17731
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17722
Number of HSP's gapped (non-prelim): 9
length of query: 1138
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1118
effective length of database: 433,880,813
effective search space: 485078748934
effective search space used: 485078748934
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)