BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550132.2.1
(603 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL377700.1|AL377700 MtBB33C07F1 MtBB Medicago truncatula... 48 9e-004
gb|AW687510.2|AW687510 NF010D05RT1F1045 Developing root Med... 48 9e-004
gb|BE319664.2|BE319664 NF017D08RT1F1062 Developing root Med... 48 9e-004
gb|BG644873.1|BG644873 EST506492 KV3 Medicago truncatula cD... 48 9e-004
gb|CA921042.1|CA921042 EST638760 MTUS Medicago truncatula c... 48 9e-004
gb|AW287870.2|AW287870 N100714e rootphos(-) Medicago trunca... 42 0.053
gb|BE239808.1|BE239808 EST403857 MHRP- Medicago truncatula ... 42 0.053
gb|AL386143.1|AL386143 MtBC32G10F1 MtBC Medicago truncatula... 42 0.053
gb|AL386704.1|AL386704 MtBC36D01R1 MtBC Medicago truncatula... 42 0.053
emb|CR510429.1| mth4-22M9RM1 BAC end, cultivar Jemalong A17... 40 0.21
gb|AC136142.12| Medicago truncatula clone mth2-9f9, complet... 40 0.21
gb|AC128638.34| Medicago truncatula clone mth2-36h10, compl... 40 0.21
gb|AC140720.21| Medicago truncatula clone mth2-17l10, compl... 40 0.21
gb|AC147000.32| Medicago truncatula clone mth2-124a16, comp... 40 0.21
>gb|AL377700.1|AL377700 MtBB33C07F1 MtBB Medicago truncatula cDNA clone MtBB33C07 T3, mRNA
sequence
Length = 473
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagtagcc 468
|||||||||||| || |||| ||||| ||| || ||||||||||||||
Sbjct: 132 catgtcctcctttacattggagaaaattgtaggttcaatgtagtagcc 85
>gb|AW687510.2|AW687510 NF010D05RT1F1045 Developing root Medicago truncatula cDNA clone
NF010D05RT 5', mRNA sequence
Length = 558
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagtagcc 468
|||||||||||| || |||| ||||| ||| || ||||||||||||||
Sbjct: 290 catgtcctcctttacattggagaaaattgtaggttcaatgtagtagcc 243
>gb|BE319664.2|BE319664 NF017D08RT1F1062 Developing root Medicago truncatula cDNA clone
NF017D08RT 5', mRNA sequence
Length = 499
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagtagcc 468
|||||||||||| || |||| ||||| ||| || ||||||||||||||
Sbjct: 256 catgtcctcctttacattggagaaaattgtaggttcaatgtagtagcc 209
>gb|BG644873.1|BG644873 EST506492 KV3 Medicago truncatula cDNA clone pKV3-38H21 5' end,
mRNA sequence
Length = 740
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagtagcc 468
|||||||||||| || |||| ||||| ||| || ||||||||||||||
Sbjct: 415 catgtcctcctttacattggagaaaattgtaggttcaatgtagtagcc 462
>gb|CA921042.1|CA921042 EST638760 MTUS Medicago truncatula cDNA clone MTUS-35D1, mRNA
sequence
Length = 674
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagtagcc 468
|||||||||||| || |||| ||||| ||| || ||||||||||||||
Sbjct: 396 catgtcctcctttacattggagaaaattgtaggttcaatgtagtagcc 443
>gb|AW287870.2|AW287870 N100714e rootphos(-) Medicago truncatula cDNA clone MHRP-10E1, mRNA
sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.053
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagta 465
|||||||||||| || || | ||||| ||| ||||||||||||||
Sbjct: 52 catgtcctccttaacatttgagaaaattgtaggctcaatgtagta 8
>gb|BE239808.1|BE239808 EST403857 MHRP- Medicago truncatula cDNA clone pMHRP-38M20, mRNA
sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.053
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagta 465
|||||||||||| || || | ||||| ||| ||||||||||||||
Sbjct: 324 catgtcctccttaacatttgagaaaattgtaggctcaatgtagta 280
>gb|AL386143.1|AL386143 MtBC32G10F1 MtBC Medicago truncatula cDNA clone MtBC32G10 T3, mRNA
sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.053
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagta 465
|||||||||||| || || | ||||| ||| ||||||||||||||
Sbjct: 222 catgtcctccttaacatttgagaaaattgtaggctcaatgtagta 178
>gb|AL386704.1|AL386704 MtBC36D01R1 MtBC Medicago truncatula cDNA clone MtBC36D01 T7, mRNA
sequence
Length = 522
Score = 42.1 bits (21), Expect = 0.053
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 421 catgtcctccttgacgttggtgaaaactgtgggctcaatgtagta 465
|||||||||||| || || | ||||| ||| ||||||||||||||
Sbjct: 62 catgtcctccttaacatttgagaaaattgtaggctcaatgtagta 18
>emb|CR510429.1| mth4-22M9RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttattatcaataaataaata 31
||||||||||||||||||||
Sbjct: 115 ttattatcaataaataaata 134
>gb|AC136142.12| Medicago truncatula clone mth2-9f9, complete sequence
Length = 68984
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12 ttattatcaataaataaata 31
||||||||||||||||||||
Sbjct: 61569 ttattatcaataaataaata 61550
>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence
Length = 110895
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 aataaataaatatcttttga 39
||||||||||||||||||||
Sbjct: 54677 aataaataaatatcttttga 54658
>gb|AC140720.21| Medicago truncatula clone mth2-17l10, complete sequence
Length = 122940
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttattatcaataaataaata 31
||||||||||||||||||||
Sbjct: 4578 ttattatcaataaataaata 4597
>gb|AC147000.32| Medicago truncatula clone mth2-124a16, complete sequence
Length = 113682
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12 ttattatcaataaataaata 31
||||||||||||||||||||
Sbjct: 64984 ttattatcaataaataaata 64965
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,004
Number of Sequences: 392609
Number of extensions: 116004
Number of successful extensions: 9605
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9568
Number of HSP's gapped (non-prelim): 37
length of query: 603
length of database: 441,732,993
effective HSP length: 19
effective length of query: 584
effective length of database: 434,273,422
effective search space: 253615678448
effective search space used: 253615678448
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)