BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521334.2.1
(1277 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL381257.1|AL381257 MtBB57H04R1 MtBB Medicago truncatula... 40 0.45
gb|BG644399.1|BG644399 EST506018 KV3 Medicago truncatula cD... 40 0.45
gb|BI272695.1|BI272695 NF026F09FL1F1078 Developing flower M... 40 0.45
gb|BI311142.1|BI311142 EST5312892 GESD Medicago truncatula ... 40 0.45
gb|BQ146807.1|BQ146807 NF028E07FL1F1054 Developing flower M... 40 0.45
gb|BQ165166.1|BQ165166 EST611035 KVKC Medicago truncatula c... 40 0.45
gb|CX540474.1|CX540474 s13dNF49G03GS020_464224 Germinating ... 40 0.45
gb|AC146590.25| Medicago truncatula clone mth2-145p10, comp... 40 0.45
emb|AJ441322.1|MTR441322 Medicago truncatula ann1 gene for ... 40 0.45
emb|Y15036.1|MTANNEXIN Medicago truncatula mRNA for annexin 40 0.45
>gb|AL381257.1|AL381257 MtBB57H04R1 MtBB Medicago truncatula cDNA clone MtBB57H04 T7, mRNA
sequence
Length = 461
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 181 aggagcaaaacccagctgattgcgacattcaa 150
>gb|BG644399.1|BG644399 EST506018 KV3 Medicago truncatula cDNA clone pKV3-37M11 5' end,
mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 628 aaggcttacagtgatgatgagatcatcagaat 659
|||||||||||||| |||||| |||| |||||
Sbjct: 548 aaggcttacagtgacgatgaggtcattagaat 579
>gb|BI272695.1|BI272695 NF026F09FL1F1078 Developing flower Medicago truncatula cDNA clone
NF026F09FL 5', mRNA sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 600 aggagcaaaacccagctgattgcgacattcaa 631
>gb|BI311142.1|BI311142 EST5312892 GESD Medicago truncatula cDNA clone pGESD10E15 5' end,
mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 87 aggagcaaaacccagctgattgcgacattcaa 118
>gb|BQ146807.1|BQ146807 NF028E07FL1F1054 Developing flower Medicago truncatula cDNA clone
NF028E07FL 5', mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 612 aggagcaaaacccagctgattgcgacattcaa 643
>gb|BQ165166.1|BQ165166 EST611035 KVKC Medicago truncatula cDNA clone pKVKC-6D11, mRNA
sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 579 aggagcaaaacccagctgattgcgacattcaa 548
>gb|CX540474.1|CX540474 s13dNF49G03GS020_464224 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 127 aggagcaaaacccagctgattgcgacattcaa 158
>gb|AC146590.25| Medicago truncatula clone mth2-145p10, complete sequence
Length = 130834
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 82446 aggagcaaaacccagctgattgcgacattcaa 82477
>emb|AJ441322.1|MTR441322 Medicago truncatula ann1 gene for annexin, exons 1-6
Length = 2034
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 1165 aggagcaaaacccagctgattgcgacattcaa 1196
>emb|Y15036.1|MTANNEXIN Medicago truncatula mRNA for annexin
Length = 1202
Score = 40.1 bits (20), Expect = 0.45
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 670 aggagcaaacctcagctgattgctacattcaa 701
||||||||| | ||||||||||| ||||||||
Sbjct: 611 aggagcaaaacccagctgattgcgacattcaa 642
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159,400
Number of Sequences: 392609
Number of extensions: 159400
Number of successful extensions: 9620
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9607
Number of HSP's gapped (non-prelim): 13
length of query: 1277
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1257
effective length of database: 433,880,813
effective search space: 545388181941
effective search space used: 545388181941
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)