BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493944.2.2
(2027 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC155228.11| Medicago truncatula clone mth2-139i19, comp... 48 0.003
emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2... 42 0.18
emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-5... 42 0.18
>gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete sequence
Length = 112322
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 253 atgtactacaaggggtggtaccatttcttctaccaatacaatcc 296
||||| ||||| || |||||||| || |||||||||||||||||
Sbjct: 29955 atgtattacaaaggatggtaccactttttctaccaatacaatcc 29998
>emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2-45l22, COMPLETE SEQUENCE
Length = 112211
Score = 42.1 bits (21), Expect = 0.18
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 268 tggtaccatttcttctaccaatacaatcc 296
||||||||||| || ||||||||||||||
Sbjct: 47441 tggtaccatttattttaccaatacaatcc 47413
>emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 on chromosome 3, complete
sequence
Length = 115163
Score = 42.1 bits (21), Expect = 0.18
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1982 acaaagacaaattgactattt 2002
|||||||||||||||||||||
Sbjct: 105250 acaaagacaaattgactattt 105270
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,211
Number of Sequences: 392609
Number of extensions: 245211
Number of successful extensions: 19312
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19294
Number of HSP's gapped (non-prelim): 18
length of query: 2027
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2007
effective length of database: 433,880,813
effective search space: 870798791691
effective search space used: 870798791691
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)