BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493695.2.1
(570 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW257183.1|AW257183 EST305320 KV2 Medicago truncatula cD... 40 0.20
gb|AW573842.1|AW573842 EST316433 GVN Medicago truncatula cD... 40 0.20
gb|AW775944.1|AW775944 EST335009 DSIL Medicago truncatula c... 40 0.20
gb|AW127572.2|AW127572 M110299 DSLC Medicago truncatula cDN... 40 0.20
gb|BE999382.1|BE999382 EST431105 GVSN Medicago truncatula c... 40 0.20
gb|BE999721.1|BE999721 EST431444 GVSN Medicago truncatula c... 40 0.20
gb|BF006143.1|BF006143 EST434578 DSLC Medicago truncatula c... 40 0.20
gb|BG450606.1|BG450606 NF036E03DT1F1023 Drought Medicago tr... 40 0.20
gb|BG583879.1|BG583879 EST485637 GVN Medicago truncatula cD... 40 0.20
gb|BG646779.1|BG646779 EST508398 HOGA Medicago truncatula c... 40 0.20
gb|BI271907.1|BI271907 NF016A09FL1F1068 Developing flower M... 40 0.20
gb|CX517313.1|CX517313 s13dNF07D11VI094_399645 Virus-Infect... 40 0.20
gb|AC135316.15| Medicago truncatula clone mth2-20l8, comple... 40 0.20
gb|AC138579.15| Medicago truncatula clone mth2-7b13, WORKIN... 40 0.20
>gb|AW257183.1|AW257183 EST305320 KV2 Medicago truncatula cDNA clone KV2-7F7, mRNA sequence
Length = 554
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 134 gatggatcggctgcggcggcggaa 111
>gb|AW573842.1|AW573842 EST316433 GVN Medicago truncatula cDNA clone pGVN-48N8, mRNA
sequence
Length = 439
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 188 gatggatcggctgcggcggcggaa 165
>gb|AW775944.1|AW775944 EST335009 DSIL Medicago truncatula cDNA clone pDSIL-3H5, mRNA
sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 59 gatggatcggctgcggcggcggaa 36
>gb|AW127572.2|AW127572 M110299 DSLC Medicago truncatula cDNA clone L90, mRNA sequence
Length = 412
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 240 gatggatcggctgcggcggcggaa 217
>gb|BE999382.1|BE999382 EST431105 GVSN Medicago truncatula cDNA clone pGVSN-16A20, mRNA
sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 161 gatggatcggctgcggcggcggaa 138
>gb|BE999721.1|BE999721 EST431444 GVSN Medicago truncatula cDNA clone pGVSN-24I4, mRNA
sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 188 gatggatcggctgcggcggcggaa 165
>gb|BF006143.1|BF006143 EST434578 DSLC Medicago truncatula cDNA clone pDSLC-39H7, mRNA
sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 188 gatggatcggctgcggcggcggaa 165
>gb|BG450606.1|BG450606 NF036E03DT1F1023 Drought Medicago truncatula cDNA clone NF036E03DT
5', mRNA sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 230 gatggatcggctgcggcggcggaa 207
>gb|BG583879.1|BG583879 EST485637 GVN Medicago truncatula cDNA clone pGVN-74F16 5' end,
mRNA sequence
Length = 729
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 188 gatggatcggctgcggcggcggaa 165
>gb|BG646779.1|BG646779 EST508398 HOGA Medicago truncatula cDNA clone pHOGA-9D22 5' end,
mRNA sequence
Length = 763
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 188 gatggatcggctgcggcggcggaa 165
>gb|BI271907.1|BI271907 NF016A09FL1F1068 Developing flower Medicago truncatula cDNA clone
NF016A09FL 5', mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 83 gatggatcggctgcggcggcggaa 60
>gb|CX517313.1|CX517313 s13dNF07D11VI094_399645 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 259 gatggatcggcggcggcggcggaa 282
||||||||||| ||||||||||||
Sbjct: 55 gatggatcggctgcggcggcggaa 32
>gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete sequence
Length = 127653
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 284 ggaaggggaaggagaaggag 303
||||||||||||||||||||
Sbjct: 44410 ggaaggggaaggagaaggag 44391
>gb|AC138579.15| Medicago truncatula clone mth2-7b13, WORKING DRAFT SEQUENCE, 33
unordered pieces
Length = 145436
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 284 ggaaggggaaggagaaggag 303
||||||||||||||||||||
Sbjct: 26598 ggaaggggaaggagaaggag 26579
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,631
Number of Sequences: 392609
Number of extensions: 68631
Number of successful extensions: 5896
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5879
Number of HSP's gapped (non-prelim): 17
length of query: 570
length of database: 441,732,993
effective HSP length: 19
effective length of query: 551
effective length of database: 434,273,422
effective search space: 239284655522
effective search space used: 239284655522
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)