BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2485939.2.1
         (530 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC145329.35|  Medicago truncatula clone mth2-8i21, comple...    46   0.003
gb|AW694738.1|AW694738  NF079D10ST1F1089 Developing stem Med...    42   0.046

>gb|AC145329.35| Medicago truncatula clone mth2-8i21, complete sequence
          Length = 123357

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 384   cacttgcctggcaggaccgacaacgaggtcaagaactactggaactc 430
             |||||||| ||||| || ||||||||| | || ||||||||||||||
Sbjct: 79601 cacttgccaggcagaacagacaacgagattaaaaactactggaactc 79647



>gb|AW694738.1|AW694738 NF079D10ST1F1089 Developing stem Medicago truncatula cDNA clone
           NF079D10ST 5', mRNA sequence
          Length = 661

 Score = 42.1 bits (21), Expect = 0.046
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 252 aagagctgcaggctgcggtggatcaactacctt 284
           ||||||||||||||  |||||||||| ||||||
Sbjct: 24  aagagctgcaggcttaggtggatcaattacctt 56



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,154
Number of Sequences: 392609
Number of extensions: 49154
Number of successful extensions: 5061
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5058
Number of HSP's gapped (non-prelim): 3
length of query: 530
length of database: 441,732,993
effective HSP length: 19
effective length of query: 511
effective length of database: 434,273,422
effective search space: 221913718642
effective search space used: 221913718642
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)