BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2485885.2.1
         (1063 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BQ750534.1|BQ750534  EST633270 KVKC Medicago truncatula c...    40   0.37 
gb|CA921240.1|CA921240  EST638958 MTUS Medicago truncatula c...    40   0.37 
gb|CB893822.1|CB893822  EST646614 HOGA Medicago truncatula c...    40   0.37 
gb|CX539644.1|CX539644  s13dNF66D12GS094_462556 Germinating ...    40   0.37 

>gb|BQ750534.1|BQ750534 EST633270 KVKC Medicago truncatula cDNA, mRNA sequence
          Length = 723

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 415 cactgtggctggaactcggt 434
           ||||||||||||||||||||
Sbjct: 548 cactgtggctggaactcggt 529



>gb|CA921240.1|CA921240 EST638958 MTUS Medicago truncatula cDNA clone MTUS-37G6, mRNA
           sequence
          Length = 823

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 415 cactgtggctggaactcggt 434
           ||||||||||||||||||||
Sbjct: 528 cactgtggctggaactcggt 509



>gb|CB893822.1|CB893822 EST646614 HOGA Medicago truncatula cDNA clone HOGA-29I13, mRNA
           sequence
          Length = 519

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 897 aactccacctgcagatacatctga 920
           |||||||| |||||||||||||||
Sbjct: 270 aactccacgtgcagatacatctga 247



>gb|CX539644.1|CX539644 s13dNF66D12GS094_462556 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 593

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 897 aactccacctgcagatacatctga 920
           |||||||| |||||||||||||||
Sbjct: 375 aactccacgtgcagatacatctga 352



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 173,786
Number of Sequences: 392609
Number of extensions: 173786
Number of successful extensions: 15974
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15970
Number of HSP's gapped (non-prelim): 4
length of query: 1063
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1043
effective length of database: 433,880,813
effective search space: 452537687959
effective search space used: 452537687959
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)