BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2455878.2.1
         (1327 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI310579.1|BI310579  EST5312329 GESD Medicago truncatula ...    40   0.47 
gb|DW015675.1|DW015675  EST1224636 MTY Medicago truncatula c...    40   0.47 

>gb|BI310579.1|BI310579 EST5312329 GESD Medicago truncatula cDNA clone pGESD8O20 5' end,
           mRNA sequence
          Length = 605

 Score = 40.1 bits (20), Expect = 0.47
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 446 aagaaggaggaggacgagga 465
           ||||||||||||||||||||
Sbjct: 330 aagaaggaggaggacgagga 311



>gb|DW015675.1|DW015675 EST1224636 MTY Medicago truncatula cDNA clone MTYA828, mRNA
           sequence
          Length = 535

 Score = 40.1 bits (20), Expect = 0.47
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 446 aagaaggaggaggacgagga 465
           ||||||||||||||||||||
Sbjct: 323 aagaaggaggaggacgagga 304



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 193,368
Number of Sequences: 392609
Number of extensions: 193368
Number of successful extensions: 21141
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21139
Number of HSP's gapped (non-prelim): 2
length of query: 1327
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1307
effective length of database: 433,880,813
effective search space: 567082222591
effective search space used: 567082222591
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)