BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2448655.2.1
         (682 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC152498.11|  Medicago truncatula clone mth2-38m20, compl...    64   2e-008
gb|CG940173.1|CG940173  MBEJW07TF mth2 Medicago truncatula g...    56   4e-006
gb|BQ157176.1|BQ157176  NF102A07IR1F1053 Irradiated Medicago...    48   0.001

>gb|AC152498.11| Medicago truncatula clone mth2-38m20, complete sequence
          Length = 127132

 Score = 63.9 bits (32), Expect = 2e-008
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 245   catcattatgtaggaggccagagccaaagcaattttgcttctgttttcacttactgtgat 304
             ||||||||||| ||||| || ||||| ||||||||||| || |||||||| || ||||||
Sbjct: 67515 catcattatgttggaggacaaagccagagcaattttgcatcagttttcacatattgtgat 67574

                                 
Query: 305   tacttatatggcactgacaa 324
             ||| | ||||| || |||||
Sbjct: 67575 tacatctatggaacagacaa 67594



>gb|CG940173.1|CG940173 MBEJW07TF mth2 Medicago truncatula genomic clone 71B13, DNA
           sequence
          Length = 892

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 200 acaaagtatattccattctatggaggagcagaataccatgactatcatcattatgt 255
           ||||||||||| |||||||| |||||  | | |||||||||||| |||||||||||
Sbjct: 767 acaaagtatataccattctacggaggtcctgcataccatgactaccatcattatgt 712



>gb|BQ157176.1|BQ157176 NF102A07IR1F1053 Irradiated Medicago truncatula cDNA clone
           NF102A07IR 5', mRNA sequence
          Length = 560

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 266 agccaaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaa 325
           ||||| ||||||||||| || |||||||| || ||||||||| | ||||| || ||||| 
Sbjct: 12  agccagagcaattttgcatcagttttcacatattgtgattacatctatggaacagacaag 71

               
Query: 326 ggtt 329
           ||||
Sbjct: 72  ggtt 75



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,386
Number of Sequences: 392609
Number of extensions: 138386
Number of successful extensions: 12745
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12740
Number of HSP's gapped (non-prelim): 5
length of query: 682
length of database: 441,732,993
effective HSP length: 19
effective length of query: 663
effective length of database: 434,273,422
effective search space: 287923278786
effective search space used: 287923278786
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)