BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2448489.2.1
         (677 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR342640.1|  mte1-75O10RM1 BAC end, cultivar Jemalong A1...    68   1e-009
emb|CR487622.1|  mth2-156D5FM1 BAC end, cultivar Jemalong A1...    40   0.24 

>emb|CR342640.1| mte1-75O10RM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 364

 Score = 67.9 bits (34), Expect = 1e-009
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                       
Query: 423 gcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatccccatag 482
           ||||||||||| || | ||||||||| || ||||| | ||| ||||| ||||| ||||| 
Sbjct: 197 gcaaaattaaaagccctctccatgctactaaggcatctctctactggataatctccataa 138

                                                         
Query: 483 ctcccacatggcttgcacccaacaaagtgagtcacgaaaggccacc 528
           |||||||| ||||| ||||| || || || ||||| ||||||||||
Sbjct: 137 ctcccacaaggcttacaccccacgaaatgcgtcacaaaaggccacc 92



>emb|CR487622.1| mth2-156D5FM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 597

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 89  ataataaacaaagcttgcaatctc 112
           |||||||| |||||||||||||||
Sbjct: 352 ataataaaaaaagcttgcaatctc 329



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,754
Number of Sequences: 392609
Number of extensions: 127754
Number of successful extensions: 9348
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9345
Number of HSP's gapped (non-prelim): 3
length of query: 677
length of database: 441,732,993
effective HSP length: 19
effective length of query: 658
effective length of database: 434,273,422
effective search space: 285751911676
effective search space used: 285751911676
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)