BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2441599.2.2
         (767 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ846992.1|AJ846992  AJ846992 MtSTW Medicago truncatula c...    44   0.017

>gb|AJ846992.1|AJ846992 AJ846992 MtSTW Medicago truncatula cDNA clone MtTW03A20N1, mRNA
           sequence
          Length = 439

 Score = 44.1 bits (22), Expect = 0.017
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 151 ttcgtggagcactactaccggacgttcgacaccaaccg 188
           ||||||||||||||||||   || ||||||||||||||
Sbjct: 370 ttcgtggagcactactacaccaccttcgacaccaaccg 333



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,833
Number of Sequences: 392609
Number of extensions: 111833
Number of successful extensions: 8679
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8676
Number of HSP's gapped (non-prelim): 3
length of query: 767
length of database: 441,732,993
effective HSP length: 20
effective length of query: 747
effective length of database: 433,880,813
effective search space: 324108967311
effective search space used: 324108967311
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)