BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441327.2.1
(884 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW774013.1|AW774013 EST332999 KV3 Medicago truncatula cD... 40 0.31
gb|AC148655.4| Medicago truncatula clone mth2-61c11, comple... 40 0.31
gb|AC148446.2| Medicago truncatula chromosome 2 clone mth2-... 40 0.31
>gb|AW774013.1|AW774013 EST332999 KV3 Medicago truncatula cDNA clone pKV3-16H8, mRNA
sequence
Length = 506
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 602 gacgccgctgctggcggcgt 621
||||||||||||||||||||
Sbjct: 272 gacgccgctgctggcggcgt 291
>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence
Length = 89884
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 750 acatgtttcttttctttttt 769
||||||||||||||||||||
Sbjct: 57451 acatgtttcttttctttttt 57470
>gb|AC148446.2| Medicago truncatula chromosome 2 clone mth2-58i9, *** SEQUENCING IN
PROGRESS ***, 11 unordered pieces
Length = 127336
Score = 40.1 bits (20), Expect = 0.31
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 750 acatgtttcttttctttttt 769
||||||||||||||||||||
Sbjct: 125091 acatgtttcttttctttttt 125110
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,165
Number of Sequences: 392609
Number of extensions: 157165
Number of successful extensions: 13607
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13598
Number of HSP's gapped (non-prelim): 9
length of query: 884
length of database: 441,732,993
effective HSP length: 20
effective length of query: 864
effective length of database: 433,880,813
effective search space: 374873022432
effective search space used: 374873022432
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)