BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441058.2.1
(1000 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF520087.1|BF520087 EST457555 DSIL Medicago truncatula c... 98 2e-018
gb|AW692291.2|AW692291 NF054B06ST1F1000 Developing stem Med... 98 2e-018
gb|BG582566.1|BG582566 EST484311 GVN Medicago truncatula cD... 86 7e-015
gb|AW776135.1|AW776135 EST335200 DSIL Medicago truncatula c... 84 3e-014
gb|AW127648.2|AW127648 M110389 DSLC Medicago truncatula cDN... 84 3e-014
gb|AL375723.1|AL375723 MtBB16F02R1 MtBB Medicago truncatula... 54 2e-005
gb|AC141109.13| Medicago truncatula clone mth2-16p3, comple... 48 0.001
>gb|BF520087.1|BF520087 EST457555 DSIL Medicago truncatula cDNA clone pDSIL-22H19, mRNA
sequence
Length = 651
Score = 97.6 bits (49), Expect = 2e-018
Identities = 157/193 (81%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| ||||| || ||||| || ||||||||||| || |||||||||| ||
Sbjct: 20 ttggtgatgtttatattcacccatcagcaaaggtgcatccgtctgcaaagattggtcctg 79
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
||| || ||||| |||||||| || | ||||||||||| ||||| || ||||| |||
Sbjct: 80 gtgtatcaatatctgcaaatgctcgtataggagctggtgcaaggctcataaattgtatag 139
Query: 512 ttctggatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtgga 571
| || |||||||||||||| | ||| |||||||||||| | ||| ||||||| || ||||
Sbjct: 140 tccttgatgatgttgaaatcaaggagaatgctgttgttcttcatgcaattgttggatgga 199
Query: 572 aatcatccattgg 584
|||| ||||||||
Sbjct: 200 aatcctccattgg 212
>gb|AW692291.2|AW692291 NF054B06ST1F1000 Developing stem Medicago truncatula cDNA clone
NF054B06ST 5', mRNA sequence
Length = 494
Score = 97.6 bits (49), Expect = 2e-018
Identities = 157/193 (81%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| ||||| || ||||| || ||||||||||| || |||||||||| ||
Sbjct: 267 ttggtgatgtttatattcacccatcagcaaaggtgcatccgtctgcaaagattggtcctg 326
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
||| || ||||| |||||||| || | ||||||||||| ||||| || ||||| |||
Sbjct: 327 gtgtatcaatatctgcaaatgctcgtataggagctggtgcaaggctcataaattgtatag 386
Query: 512 ttctggatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtgga 571
| || |||||||||||||| | ||| |||||||||||| | ||| ||||||| || ||||
Sbjct: 387 tccttgatgatgttgaaatcaaggagaatgctgttgttcttcatgcaattgttggatgga 446
Query: 572 aatcatccattgg 584
|||| ||||||||
Sbjct: 447 aatcctccattgg 459
>gb|BG582566.1|BG582566 EST484311 GVN Medicago truncatula cDNA clone pGVN-70E19 5' end,
mRNA sequence
Length = 783
Score = 85.7 bits (43), Expect = 7e-015
Identities = 173/215 (80%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| ||||| || ||||| || ||||||||||| || |||||||||| ||
Sbjct: 439 ttggtgatgtttatattcacccatcagcaaaggtgcatccgtctgcaaagattggtcctg 498
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
||| || ||||| |||||||| || | ||||||||||| ||||| || ||||| |||
Sbjct: 499 gtgtatcaatatctgcaaatgctcgtataggagctggtgcaaggctcataaattgtatag 558
Query: 512 ttctggatgatgttgaaattatggaaaat-gctgttgttatacattcaattgtagggtgg 570
| || |||||||||||||| | ||| ||| ||||||||| | ||| ||||||| || |||
Sbjct: 559 tccttgatgatgttgaaatcaaggagaatggctgttgttcttcatgcaattgttggatgg 618
Query: 571 aaatcatccattggaaaatggtcacgtgtacaggg 605
||||| |||||||| |||| ||||||| |||||
Sbjct: 619 aaatcctccattggtcgatgggcacgtgtccaggg 653
>gb|AW776135.1|AW776135 EST335200 DSIL Medicago truncatula cDNA clone pDSIL-6M21, mRNA
sequence
Length = 488
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 460 atatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctggat 519
||||| |||||||| || | ||||||||||| ||||| || ||||| ||| | || |||
Sbjct: 484 atatctgcaaatgctcgtataggagctggtgcaaggctcataaattgtatagtccttgat 425
Query: 520 gatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatcc 579
||||||||||| | ||| |||||||||||| | ||| ||||||| || |||||||| |||
Sbjct: 424 gatgttgaaatcaaggagaatgctgttgttcttcatgcaattgttggatggaaatcctcc 365
Query: 580 attggaaaatggtcacgtgtacaggg 605
||||| |||| ||||||| |||||
Sbjct: 364 attggtcgatgggcacgtgtccaggg 339
>gb|AW127648.2|AW127648 M110389 DSLC Medicago truncatula cDNA clone L203, mRNA sequence
Length = 365
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 460 atatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctggat 519
||||| |||||||| || | ||||||||||| ||||| || ||||| ||| | || |||
Sbjct: 176 atatctgcaaatgctcgtataggagctggtgcaaggctcataaattgtatagtccttgat 235
Query: 520 gatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatcc 579
||||||||||| | ||| |||||||||||| | ||| ||||||| || |||||||| |||
Sbjct: 236 gatgttgaaatcaaggagaatgctgttgttcttcatgcaattgttggatggaaatcctcc 295
Query: 580 attggaaaatggtcacgtgtacaggg 605
||||| |||| ||||||| |||||
Sbjct: 296 attggtcgatgggcacgtgtccaggg 321
>gb|AL375723.1|AL375723 MtBB16F02R1 MtBB Medicago truncatula cDNA clone MtBB16F02 T7, mRNA
sequence
Length = 552
Score = 54.0 bits (27), Expect = 2e-005
Identities = 105/131 (80%)
Strand = Plus / Plus
Query: 523 gttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatccatt 582
|||||| ||| ||||||||| || || ||| |||| ||||| || ||||| || || |
Sbjct: 1 gttgaagttaaggaaaatgcggtagtcataaattccattgttggatggaagtcgtcgctc 60
Query: 583 ggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcattactatt 642
|||| ||||||||||||||||| || |||||| ||| ||| || |||||||| || ||
Sbjct: 61 ggaagatggtcacgtgtacaggctgatggtgattacagtgcaaagcttggcataaccatc 120
Query: 643 cttggtgaagc 653
|| ||||||||
Sbjct: 121 ctaggtgaagc 131
>gb|AC141109.13| Medicago truncatula clone mth2-16p3, complete sequence
Length = 116180
Score = 48.1 bits (24), Expect = 0.001
Identities = 108/136 (79%)
Strand = Plus / Plus
Query: 296 tgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatcttt 355
||||||||| |||||| | ||| ||||| |||| ||||| |||| || || |||||||
Sbjct: 97311 tgtctttgaaatgctcggagttgtatcttgctcaatttcggtatacttccccccatcttt 97370
Query: 356 tagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatccat 415
| ||| |||||||| |||| || ||| | ||||| || ||||| ||||| |||||||
Sbjct: 97371 tggccagtggagatggtaaaaaaaatgctaaaattgtcggtgatgtatatattcatccat 97430
Query: 416 ctgccaaggtgcatcc 431
||||||| || |||||
Sbjct: 97431 ctgccaaagttcatcc 97446
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 310,277
Number of Sequences: 392609
Number of extensions: 310277
Number of successful extensions: 23206
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23183
Number of HSP's gapped (non-prelim): 23
length of query: 1000
length of database: 441,732,993
effective HSP length: 20
effective length of query: 980
effective length of database: 433,880,813
effective search space: 425203196740
effective search space used: 425203196740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)