BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440958.2.1
         (791 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AZ124301.1|AZ124301  T223039b Medicago truncatula BAC lib...    40   0.28 
gb|AC123593.1|  Genomic sequence for Medicago truncatula, cl...    40   0.28 

>gb|AZ124301.1|AZ124301 T223039b Medicago truncatula BAC library Medicago truncatula
           genomic clone 52G10, DNA sequence
          Length = 407

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 712 ttatatatatcatataaata 731
           ||||||||||||||||||||
Sbjct: 278 ttatatatatcatataaata 297



>gb|AC123593.1| Genomic sequence for Medicago truncatula, clone MTABa0052G10, complete
             sequence
          Length = 100769

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 712   ttatatatatcatataaata 731
             ||||||||||||||||||||
Sbjct: 42831 ttatatatatcatataaata 42850



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,871
Number of Sequences: 392609
Number of extensions: 192871
Number of successful extensions: 16846
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16839
Number of HSP's gapped (non-prelim): 7
length of query: 791
length of database: 441,732,993
effective HSP length: 20
effective length of query: 771
effective length of database: 433,880,813
effective search space: 334522106823
effective search space used: 334522106823
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)