BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL378329.1|AL378329 MtBB37E05F1 MtBB Medicago truncatula... 107 1e-021
gb|BI310627.1|BI310627 EST5312377 GESD Medicago truncatula ... 50 2e-004
gb|AJ501762.1|AJ501762 AJ501762 MTAMP Medicago truncatula c... 50 2e-004
emb|CR331089.1| mte1-60I7FM1 BAC end, cultivar Jemalong A17... 42 0.053
>gb|AL378329.1|AL378329 MtBB37E05F1 MtBB Medicago truncatula cDNA clone MtBB37E05 T3, mRNA
sequence
Length = 434
Score = 107 bits (54), Expect = 1e-021
Identities = 147/178 (82%)
Strand = Plus / Minus
Query: 319 cttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagtagcggaacaattc 378
|||||| || ||||||||||| ||||| ||||| ||||||||||| || |||| ||| |
Sbjct: 202 cttctcgataaggtcaacatgggtcataagcatacgcctgcagcaatatcggaccaaccc 143
Query: 379 caaagcatccagagcatccccttctgagtagtcggcctggaggaggtcgaggtatagatc 438
|||||||||||| ||||| ||||| | ||| || || || || | ||| ||||| |||
Sbjct: 142 caaagcatccagtgcatctccttcagtgtaatcagcttgaagaaagtcaaggtaagaatc 83
Query: 439 ccacttgttcccaataaccttgccgcaggtgaagcagcgcactgggataatcatcttc 496
||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 82 ccatttgtttccaatgacctttccgcaggtgaaccaacgaactgggataatcatcttc 25
>gb|BI310627.1|BI310627 EST5312377 GESD Medicago truncatula cDNA clone pGESD8J1 5' end,
mRNA sequence
Length = 492
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 320 ttctcaatgaggtcaacatgtgtcatgagcattcgcctgca 360
||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 202 ttctcaatgagatcaacatgggtcataagcatgcgcctgca 162
>gb|AJ501762.1|AJ501762 AJ501762 MTAMP Medicago truncatula cDNA clone mtgmadc120011e11,
mRNA sequence
Length = 452
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 320 ttctcaatgaggtcaacatgtgtcatgagcattcgcctgca 360
||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 288 ttctcaatgagatcaacatgggtcataagcatgcgcctgca 248
>emb|CR331089.1| mte1-60I7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 645
Score = 42.1 bits (21), Expect = 0.053
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 172 tgttcacactcacaacccatttcta 196
|||||||||||| ||||||||||||
Sbjct: 480 tgttcacactcagaacccatttcta 504
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,314
Number of Sequences: 392609
Number of extensions: 127314
Number of successful extensions: 9097
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9090
Number of HSP's gapped (non-prelim): 6
length of query: 605
length of database: 441,732,993
effective HSP length: 19
effective length of query: 586
effective length of database: 434,273,422
effective search space: 254484225292
effective search space used: 254484225292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)