BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440015.2.1
         (608 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL378329.1|AL378329  MtBB37E05F1 MtBB Medicago truncatula...    76   4e-012
gb|BI310627.1|BI310627  EST5312377 GESD Medicago truncatula ...    58   9e-007
gb|AJ501762.1|AJ501762  AJ501762 MTAMP Medicago truncatula c...    58   9e-007
gb|DW019295.1|DW019295  EST1228256 MTY Medicago truncatula c...    40   0.21 
gb|AC173834.6|  Medicago truncatula clone mth2-29m16, WORKIN...    40   0.21 
emb|CT009505.6|  Medicago truncatula chromosome 3 clone MTH2...    40   0.21 

>gb|AL378329.1|AL378329 MtBB37E05F1 MtBB Medicago truncatula cDNA clone MtBB37E05 T3, mRNA
           sequence
          Length = 434

 Score = 75.8 bits (38), Expect = 4e-012
 Identities = 143/178 (80%)
 Strand = Plus / Minus

                                                                       
Query: 334 cttctcaatgaggtcaacatgggtcatgagcattcgcctgcagcagtagcggaacaattc 393
           |||||| || ||||||||||||||||| ||||| ||||||||||| || |||| |||  |
Sbjct: 202 cttctcgataaggtcaacatgggtcataagcatacgcctgcagcaatatcggaccaaccc 143

                                                                       
Query: 394 cagagcatccagagcatccccttccgagtagtcggcctggaggaggtcgaggtagaggtc 453
           || ||||||||| ||||| ||||| | ||| || || || || | ||| |||||    ||
Sbjct: 142 caaagcatccagtgcatctccttcagtgtaatcagcttgaagaaagtcaaggtaagaatc 83

                                                                     
Query: 454 ccacttgttcccaatcaccttgccgcaggtgaagcagcgcaccggtatgatcatcttc 511
           ||| ||||| ||||| ||||| ||||||||||| || || || || || |||||||||
Sbjct: 82  ccatttgtttccaatgacctttccgcaggtgaaccaacgaactgggataatcatcttc 25



>gb|BI310627.1|BI310627 EST5312377 GESD Medicago truncatula cDNA clone pGESD8J1 5' end,
           mRNA sequence
          Length = 492

 Score = 58.0 bits (29), Expect = 9e-007
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 335 ttctcaatgaggtcaacatgggtcatgagcattcgcctgca 375
           ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 202 ttctcaatgagatcaacatgggtcataagcatgcgcctgca 162



>gb|AJ501762.1|AJ501762 AJ501762 MTAMP Medicago truncatula cDNA clone mtgmadc120011e11,
           mRNA sequence
          Length = 452

 Score = 58.0 bits (29), Expect = 9e-007
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 335 ttctcaatgaggtcaacatgggtcatgagcattcgcctgca 375
           ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 288 ttctcaatgagatcaacatgggtcataagcatgcgcctgca 248



>gb|DW019295.1|DW019295 EST1228256 MTY Medicago truncatula cDNA clone MTYBH26, mRNA
           sequence
          Length = 827

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 511 cgccgccgccgccgcagctg 530
           ||||||||||||||||||||
Sbjct: 303 cgccgccgccgccgcagctg 322



>gb|AC173834.6| Medicago truncatula clone mth2-29m16, WORKING DRAFT SEQUENCE, 8
             unordered pieces
          Length = 63254

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 511   cgccgccgccgccgcagctg 530
             ||||||||||||||||||||
Sbjct: 43278 cgccgccgccgccgcagctg 43259



>emb|CT009505.6| Medicago truncatula chromosome 3 clone MTH2-180M15, WORKING DRAFT
             SEQUENCE
          Length = 112084

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 511   cgccgccgccgccgcagctg 530
             ||||||||||||||||||||
Sbjct: 71069 cgccgccgccgccgcagctg 71050



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 119,402
Number of Sequences: 392609
Number of extensions: 119402
Number of successful extensions: 8760
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8749
Number of HSP's gapped (non-prelim): 11
length of query: 608
length of database: 441,732,993
effective HSP length: 19
effective length of query: 589
effective length of database: 434,273,422
effective search space: 255787045558
effective search space used: 255787045558
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)