BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437714.2.1
(1649 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW695585.2|AW695585 NF096D09ST1F1077 Developing stem Med... 113 5e-023
gb|DW019419.1|DW019419 EST1228380 MTY Medicago truncatula c... 113 5e-023
gb|BG453610.1|BG453610 NF098H06LF1F1057 Developing leaf Med... 107 3e-021
gb|AC124215.20| Medicago truncatula clone mth2-32m6, WORKIN... 84 4e-014
gb|AW267961.1|AW267961 EST306183 DSIR Medicago truncatula c... 68 3e-009
gb|BI270211.1|BI270211 NF006F08FL1F1075 Developing flower M... 62 2e-007
gb|BG448285.1|BG448285 NF069G05EC1F1037 Elicited cell cultu... 60 6e-007
gb|CB892501.1|CB892501 EST649470 KV3 Medicago truncatula cD... 60 6e-007
gb|CB893814.1|CB893814 EST646606 HOGA Medicago truncatula c... 60 6e-007
gb|AC152351.7| Medicago truncatula clone mth2-75b20, comple... 60 6e-007
gb|AC152423.17| Medicago truncatula clone mth2-31c9, comple... 60 6e-007
gb|AC136286.27| Medicago truncatula clone mth2-6c9, WORKING... 58 2e-006
gb|BG448533.1|BG448533 NF037A01RT1F1001 Developing root Med... 56 1e-005
gb|CX526421.1|CX526421 s13dNF35F08AT075_510586 Aphid-Infect... 56 1e-005
gb|AL386017.1|AL386017 MtBC32B01F1 MtBC Medicago truncatula... 54 4e-005
gb|BE999260.1|BE999260 EST430983 GVSN Medicago truncatula c... 54 4e-005
gb|BG447962.1|BG447962 NF104C08EC1F1056 Elicited cell cultu... 52 2e-004
gb|AC137994.19| Medicago truncatula clone mth2-23f15, compl... 50 6e-004
gb|CG924168.1|CG924168 MBEJT82TFB mth2 Medicago truncatula ... 48 0.002
emb|CR341587.1| mte1-74A3FM1 BAC end, cultivar Jemalong A17... 48 0.002
emb|CR346404.1| mte1-8D20FM1 BAC end, cultivar Jemalong A17... 48 0.002
emb|CR497470.1| mth2-173B7RM1 BAC end, cultivar Jemalong A1... 48 0.002
emb|CR294633.1| mte1-10H1FM1 BAC end, cultivar Jemalong A17... 48 0.002
emb|CR969374.1| mth4-25K7FM1 BAC end, cultivar Jemalong A17... 48 0.002
gb|BE203910.1|BE203910 EST396586 KV0 Medicago truncatula cD... 48 0.002
gb|BF646131.1|BF646131 NF066H12EC1F1103 Elicited cell cultu... 48 0.002
emb|CT573216.1| Medicago truncatula chromosome 5 clone mte1... 44 0.037
emb|CR345184.1| mte1-79G21RM1 BAC end, cultivar Jemalong A1... 42 0.15
emb|CR350806.1| mte1-86A5FM1 BAC end, cultivar Jemalong A17... 42 0.15
emb|CR351320.1| mte1-86B6FM1 BAC end, cultivar Jemalong A17... 42 0.15
emb|CR303489.1| mte1-22K2RM1 BAC end, cultivar Jemalong A17... 42 0.15
emb|CR308459.1| mte1-29P10FM1 BAC end, cultivar Jemalong A1... 42 0.15
emb|CR313911.1| mte1-37O19RM1 BAC end, cultivar Jemalong A1... 42 0.15
gb|AW559998.1|AW559998 EST315046 DSIR Medicago truncatula c... 42 0.15
gb|AW559999.1|AW559999 EST315047 DSIR Medicago truncatula c... 42 0.15
gb|BG644907.1|BG644907 EST506526 KV3 Medicago truncatula cD... 42 0.15
gb|AC138015.24| Medicago truncatula clone mth2-34m6, comple... 42 0.15
gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone m... 42 0.15
gb|AC143337.22| Medicago truncatula clone mth2-35d19, WORKI... 42 0.15
>gb|AW695585.2|AW695585 NF096D09ST1F1077 Developing stem Medicago truncatula cDNA clone
NF096D09ST 5', mRNA sequence
Length = 579
Score = 113 bits (57), Expect = 5e-023
Identities = 234/293 (79%)
Strand = Plus / Minus
Query: 1138 tttcggaataagtggttttctagacttcctcgaaacatgaactcgtagacaagcagccga 1197
||||||||||| || || || | ||| ||||||||||| ||||| || |||||||||| |
Sbjct: 318 tttcggaataaatgattctccaaactccctcgaaacataaactcataaacaagcagccta 259
Query: 1198 tggtcatcttcgcagcaatatccgatcaacttcaccaaatttggatgcctcaactgcccc 1257
|| |||||||| |||||||| || |||||||| || | ||| |||||||| ||||||||
Sbjct: 258 tgatcatcttcacagcaataaccaatcaacttgacaagattcggatgccttaactgccca 199
Query: 1258 aggcagttaacctcggtaagccattctctgtgcccttgatgtccatctttgttgagcacc 1317
|| | || ||||| |||||||| ||||| || |||||| | || ||||| || | ||
Sbjct: 198 agaaaattcacctccgtaagccactctctatgtccttgaagaccttctttattcaaaact 139
Query: 1318 ttgactgcaacaggcagtgacttcagcccaaccctgacattttcatctatgtaacccttg 1377
|| || ||||| || || || || || ||||| || ||||| ||||| ||||| || ||
Sbjct: 138 ttaaccgcaaccggaagcgatttaagtccaactctaacattctcatcaatgtagccttta 79
Query: 1378 taaacggtcccaaatcctccttcgccaagaacataatcaacacggaagctctt 1430
||||| || ||||| |||||||| ||||||| ||||||| |||| || |||||
Sbjct: 78 taaacagtaccaaaccctccttcaccaagaatataatcagcacgaaaactctt 26
>gb|DW019419.1|DW019419 EST1228380 MTY Medicago truncatula cDNA clone MTYBI69, mRNA sequence
Length = 858
Score = 113 bits (57), Expect = 5e-023
Identities = 234/293 (79%)
Strand = Plus / Minus
Query: 1138 tttcggaataagtggttttctagacttcctcgaaacatgaactcgtagacaagcagccga 1197
||||||||||| || || || | ||| ||||||||||| ||||| || |||||||||| |
Sbjct: 684 tttcggaataaatgattctccaaactccctcgaaacataaactcataaacaagcagccta 625
Query: 1198 tggtcatcttcgcagcaatatccgatcaacttcaccaaatttggatgcctcaactgcccc 1257
|| |||||||| |||||||| || |||||||| || | ||| |||||||| ||||||||
Sbjct: 624 tgatcatcttcacagcaataaccaatcaacttgacaagattcggatgccttaactgccca 565
Query: 1258 aggcagttaacctcggtaagccattctctgtgcccttgatgtccatctttgttgagcacc 1317
|| | || ||||| |||||||| ||||| || |||||| | || ||||| || | ||
Sbjct: 564 agaaaattcacctccgtaagccactctctatgtccttgaagaccttctttattcaaaact 505
Query: 1318 ttgactgcaacaggcagtgacttcagcccaaccctgacattttcatctatgtaacccttg 1377
|| || ||||| || || || || || ||||| || ||||| ||||| ||||| || ||
Sbjct: 504 ttaaccgcaaccggaagcgatttaagtccaactctaacattctcatcaatgtagccttta 445
Query: 1378 taaacggtcccaaatcctccttcgccaagaacataatcaacacggaagctctt 1430
||||| || ||||| |||||||| ||||||| ||||||| |||| || |||||
Sbjct: 444 taaacagtaccaaaccctccttcaccaagaatataatcagcacgaaaactctt 392
>gb|BG453610.1|BG453610 NF098H06LF1F1057 Developing leaf Medicago truncatula cDNA clone
NF098H06LF 5', mRNA sequence
Length = 665
Score = 107 bits (54), Expect = 3e-021
Identities = 235/294 (79%), Gaps = 1/294 (0%)
Strand = Plus / Minus
Query: 1138 tttcggaataagtggttttctagacttcctcgaaacatgaactcgtagacaagcagccga 1197
||||||||||| || || || | ||| ||||||||||| ||||| || |||||||||| |
Sbjct: 326 tttcggaataaatgattctccaaactccctcgaaacataaactcataaacaagcagccta 267
Query: 1198 tggtcatcttcgcagcaatatccgatcaacttcaccaaatttggatgcctcaactgcccc 1257
|| |||||||| |||||||| || |||||||| || | ||| |||||||| ||||||||
Sbjct: 266 tgatcatcttcacagcaataaccaatcaacttgacaagattcggatgccttaactgccca 207
Query: 1258 aggcagttaacctcggtaagccattctctgtgcccttgatgtccatctttgttgagcacc 1317
|| | || ||||| |||||||| ||||| || |||||| | || ||||| || | ||
Sbjct: 206 agaaaattcacctccgtaagccactctctatgtccttgaagaccttctttattcaaaact 147
Query: 1318 ttgactgcaacaggcagtgacttcagcccaaccctgacattttcatctatgtaacccttg 1377
|| || ||||| || || || || || ||||| || ||||| ||||| ||||| || ||
Sbjct: 146 ttaaccgcaaccggaagcgatttaagtccaactctaacattctcatcaatgtagccttta 87
Query: 1378 taaac-ggtcccaaatcctccttcgccaagaacataatcaacacggaagctctt 1430
||||| ||| ||||| |||||||| ||||||| ||||||| |||| || |||||
Sbjct: 86 taaacaggtaccaaaccctccttcaccaagaatataatcagcacgaaaactctt 33
Score = 56.0 bits (28), Expect = 1e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 841 ccgaagctgtacacgtcactccgagcagtcaagtgaccggtcatcacatattcaggggca 900
|||||||| || || ||||||| ||| || | |||||| ||||| |||||||| ||||||
Sbjct: 623 ccgaagctatatacatcactcctagctgttaggtgaccagtcattacatattctggggca 564
Query: 901 gcataaccgtaggttcccat 920
||||| ||||| || |||||
Sbjct: 563 gcatagccgtatgtacccat 544
>gb|AC124215.20| Medicago truncatula clone mth2-32m6, WORKING DRAFT SEQUENCE
Length = 128628
Score = 83.8 bits (42), Expect = 4e-014
Identities = 99/118 (83%)
Strand = Plus / Plus
Query: 1139 ttcggaataagtggttttctagacttcctcgaaacatgaactcgtagacaagcagccgat 1198
|||||||||| || || || | ||| ||||||||||| ||||| || |||||||||| ||
Sbjct: 29053 ttcggaataaatgattctccaaactccctcgaaacataaactcataaacaagcagcctat 29112
Query: 1199 ggtcatcttcgcagcaatatccgatcaacttcaccaaatttggatgcctcaactgccc 1256
| |||||||| |||||||| || |||||||| || | ||| |||||||| ||||||||
Sbjct: 29113 gatcatcttcacagcaataaccaatcaacttgacaagattcggatgccttaactgccc 29170
Score = 42.1 bits (21), Expect = 0.15
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccat 920
||||| |||||||| ||||||||||| ||||| || |||||
Sbjct: 28113 gtcattacatattctggggcagcatagccgtatgtacccat 28153
>gb|AW267961.1|AW267961 EST306183 DSIR Medicago truncatula cDNA clone pDSIR-8D9, mRNA
sequence
Length = 635
Score = 67.9 bits (34), Expect = 3e-009
Identities = 154/194 (79%)
Strand = Plus / Minus
Query: 844 aagctgtacacgtcactccgagcagtcaagtgaccggtcatcacatattcaggggcagca 903
|||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||
Sbjct: 589 aagctgtacacgtcactcttggccgttaagtgacctgtcatgacatattctggggcagca 530
Query: 904 taaccgtaggttcccatcacccgtgtcgacacatgcgtctgatcaccttcagggccatct 963
|| || | || ||||| || | ||| || || || || | ||| |||||||| |||||
Sbjct: 529 tacccttgagtacccataactcttgttgaaacgtgggtgtcatctccttcaggaccatcc 470
Query: 964 tttgcgaggccaaagtcagacagtttggcagtataatcggagtccagcagaatgtttgat 1023
||||| | ||||||||||| ||||| ||| | ||||| ||||| | || ||||||||
Sbjct: 469 tttgccaacccaaagtcagagagttttgcattgtaatccgagtctaacaagatgtttgaa 410
Query: 1024 gtcttgaaatctct 1037
| |||||||||||
Sbjct: 409 gctttgaaatctct 396
>gb|BI270211.1|BI270211 NF006F08FL1F1075 Developing flower Medicago truncatula cDNA clone
NF006F08FL 5', mRNA sequence
Length = 657
Score = 61.9 bits (31), Expect = 2e-007
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 874 tgaccggtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgac 933
||||| ||||| |||||||| || || || ||||| || ||||||||||| || || |||
Sbjct: 439 tgacctgtcatgacatattctggtgctgcgtaaccatatgttcccatcactcgagtagac 380
Query: 934 acatgcgtctgatcaccttcagggccatcttttgcgaggccaaagtc 980
||||| || | ||||||||| || |||||||| || || ||||||||
Sbjct: 379 acatgggttttatcaccttctggaccatctttggcaagaccaaagtc 333
>gb|BG448285.1|BG448285 NF069G05EC1F1037 Elicited cell culture Medicago truncatula cDNA
clone NF069G05EC 5', mRNA sequence
Length = 657
Score = 60.0 bits (30), Expect = 6e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 844 aagctgtacacgtcactccgagcagtcaagtgaccggtcatcacatattcaggggcagca 903
|||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||
Sbjct: 180 aagctgtacacgtcactcttggccgttaagtgacctgtcatgacatattctggggcagca 121
Query: 904 ta 905
||
Sbjct: 120 ta 119
>gb|CB892501.1|CB892501 EST649470 KV3 Medicago truncatula cDNA clone KV3-54B4, mRNA
sequence
Length = 764
Score = 60.0 bits (30), Expect = 6e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 844 aagctgtacacgtcactccgagcagtcaagtgaccggtcatcacatattcaggggcagca 903
|||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||
Sbjct: 150 aagctgtacacgtcactcttggccgttaagtgacctgtcatgacatattctggggcagca 91
Query: 904 ta 905
||
Sbjct: 90 ta 89
>gb|CB893814.1|CB893814 EST646606 HOGA Medicago truncatula cDNA clone HOGA-29G11, mRNA
sequence
Length = 829
Score = 60.0 bits (30), Expect = 6e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 844 aagctgtacacgtcactccgagcagtcaagtgaccggtcatcacatattcaggggcagca 903
|||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||
Sbjct: 95 aagctgtacacgtcactcttggccgttaagtgacctgtcatgacatattctggggcagca 36
Query: 904 ta 905
||
Sbjct: 35 ta 34
>gb|AC152351.7| Medicago truncatula clone mth2-75b20, complete sequence
Length = 111786
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1009 agcagaatgtttgatgtcttgaaatctctgtagatgac 1046
||||||||||||||||| ||||||||||| ||||||||
Sbjct: 69300 agcagaatgtttgatgttttgaaatctctatagatgac 69263
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1153 ttttctagacttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttc 1208
|||||||||||||| ||| ||| |||||||| ||||| ||||| || ||||||||
Sbjct: 68793 ttttctagacttccacgagtcataaactcgtaaacaagaagccgctgatcatcttc 68738
>gb|AC152423.17| Medicago truncatula clone mth2-31c9, complete sequence
Length = 112783
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1009 agcagaatgtttgatgtcttgaaatctctgtagatgac 1046
||||||||||||||||| ||||||||||| ||||||||
Sbjct: 100558 agcagaatgtttgatgttttgaaatctctatagatgac 100595
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1153 ttttctagacttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttc 1208
|||||||||||||| ||| ||| |||||||| ||||| ||||| || ||||||||
Sbjct: 101065 ttttctagacttccacgagtcataaactcgtaaacaagaagccgctgatcatcttc 101120
>gb|AC136286.27| Medicago truncatula clone mth2-6c9, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 127639
Score = 58.0 bits (29), Expect = 2e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgc 939
||||| |||||||| || || || ||||| || ||||||||||| || || ||||||||
Sbjct: 42800 gtcatgacatattctggtgctgcgtaaccatatgttcccatcactcgagtagacacatgg 42741
Query: 940 gtctgatcaccttcagggccatcttttgcgaggccaaagtc 980
|| | ||||||||| || |||||||| || || ||||||||
Sbjct: 42740 gttttatcaccttctggaccatctttggcaagaccaaagtc 42700
>gb|BG448533.1|BG448533 NF037A01RT1F1001 Developing root Medicago truncatula cDNA clone
NF037A01RT 5', mRNA sequence
Length = 576
Score = 56.0 bits (28), Expect = 1e-005
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 888 atattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgcgtctgatc 947
||||||||| ||||||||||| | || ||||| || | || || ||||| || | |||
Sbjct: 436 atattcaggtgcagcataaccttgagtgcccataactctagttgaaacatgtgtgtcatc 377
Query: 948 accttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataatcggagtc 1007
|||||||| ||||||||||| | |||||| ||||| ||||| ||| |||| ||||||||
Sbjct: 376 tccttcaggaccatcttttgccaagccaaaatcagagagttttgcattatagtcggagtc 317
>gb|CX526421.1|CX526421 s13dNF35F08AT075_510586 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 649
Score = 56.0 bits (28), Expect = 1e-005
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 888 atattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgcgtctgatc 947
||||||||| ||||||||||| | || ||||| || | || || ||||| || | |||
Sbjct: 419 atattcaggtgcagcataaccttgagtgcccataactctagttgaaacatgtgtgtcatc 360
Query: 948 accttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataatcggagtc 1007
|||||||| ||||||||||| | |||||| ||||| ||||| ||| |||| ||||||||
Sbjct: 359 tccttcaggaccatcttttgccaagccaaaatcagagagttttgcattatagtcggagtc 300
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1204 tcttcgcagcaatatccgatcaacttcac 1232
||||| ||||||||||| |||||||||||
Sbjct: 103 tcttcacagcaatatccaatcaacttcac 75
>gb|AL386017.1|AL386017 MtBC32B01F1 MtBC Medicago truncatula cDNA clone MtBC32B01 T3, mRNA
sequence
Length = 495
Score = 54.0 bits (27), Expect = 4e-005
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 888 atattcaggggcagcataaccgtaggttcccatcacccgtgtcgacacatgcgtctgatc 947
||||||||| ||||||||||| | || ||||| || | || || ||||| || | |||
Sbjct: 119 atattcaggtgcagcataaccttgagtgcccataactctagttgaaacatgtgtgtcatc 60
Query: 948 accttcagggccatcttttgcgaggccaaagtcagacagtttggcagtataatcggagt 1006
|||||||| ||||||||||| | |||||| ||||| ||||| ||| |||| |||||||
Sbjct: 59 tccttcaggaccatcttttgccaagccaaaatcagagagttttgcattatagtcggagt 1
>gb|BE999260.1|BE999260 EST430983 GVSN Medicago truncatula cDNA clone pGVSN-15P23, mRNA
sequence
Length = 442
Score = 54.0 bits (27), Expect = 4e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 874 tgaccggtcatcacatattcaggggcagcataaccgtaggttcccat 920
||||| |||||||||||||| || ||||||||||| || ||||||||
Sbjct: 334 tgaccagtcatcacatattccggagcagcataaccatatgttcccat 288
>gb|BG447962.1|BG447962 NF104C08EC1F1056 Elicited cell culture Medicago truncatula cDNA clone
NF104C08EC 5', mRNA sequence
Length = 674
Score = 52.0 bits (26), Expect = 2e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatg 1244
|||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 543 tcatcttcncancaatatccaatcaattttaccaaatttggatg 500
>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
Length = 131563
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccat 920
||||||||||||||||| || |||||||| || ||||||||
Sbjct: 68452 gtcatcacatattcaggagctgcataaccatatgttcccat 68412
>gb|CG924168.1|CG924168 MBEJT82TFB mth2 Medicago truncatula genomic clone 70N20, DNA sequence
Length = 806
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatg 1244
|||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 626 tcatcttcacaacaatatccaatcaattttaccaaatttggatg 583
>emb|CR341587.1| mte1-74A3FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 612
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatg 1244
|||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 35 tcatcttcacaacaatatccaatcaattttaccaaatttggatg 78
>emb|CR346404.1| mte1-8D20FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 702
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatg 1244
|||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 39 tcatcttcacaacaatatccaatcaattttaccaaatttggatg 82
>emb|CR497470.1| mth2-173B7RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 403
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1153 ttttctagacttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttc 1208
|||||||||||||| ||| ||| |||||||| ||||| ||||| || ||||||||
Sbjct: 193 ttttctagacttccacgagtcataaactcgtaaacaagaagccgctgatcatcttc 248
>emb|CR294633.1| mte1-10H1FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 712
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatg 1244
|||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 36 tcatcttcacaacaatatccaatcaattttaccaaatttggatg 79
>emb|CR969374.1| mth4-25K7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 381
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1153 ttttctagacttcctcgaaacatgaactcgtagacaagcagccgatggtcatcttc 1208
|||||||||||||| ||| ||| |||||||| ||||| ||||| || ||||||||
Sbjct: 193 ttttctagacttccacgagtcataaactcgtaaacaagaagccgctgatcatcttc 248
>gb|BE203910.1|BE203910 EST396586 KV0 Medicago truncatula cDNA clone pKV0-13M9, mRNA sequence
Length = 615
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatg 1244
|||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 480 tcatcttcacaacaatatccaatcaattttaccaaatttggatg 437
>gb|BF646131.1|BF646131 NF066H12EC1F1103 Elicited cell culture Medicago truncatula cDNA clone
NF066H12EC 5', mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1201 tcatcttcgcagcaatatccgatcaacttcaccaaatttggatg 1244
|||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 545 tcatcttcacaacaatatccaatcaattttaccaaatttggatg 502
>emb|CT573216.1| Medicago truncatula chromosome 5 clone mte1-79f1, COMPLETE SEQUENCE
Length = 117869
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 838 acgccgaagctgtacacgtcac 859
||||||||||||||||||||||
Sbjct: 24129 acgccgaagctgtacacgtcac 24150
>emb|CR345184.1| mte1-79G21RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.15
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccat 920
||||| |||||||| ||||||||||| ||||| || |||||
Sbjct: 305 gtcattacatattctggggcagcatagccgtatgtacccat 345
>emb|CR350806.1| mte1-86A5FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 777
Score = 42.1 bits (21), Expect = 0.15
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccat 920
||||| |||||||| ||||||||||| ||||| || |||||
Sbjct: 315 gtcattacatattctggggcagcatagccgtatgtacccat 355
>emb|CR351320.1| mte1-86B6FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 637
Score = 42.1 bits (21), Expect = 0.15
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccat 920
||||| |||||||| ||||||||||| ||||| || |||||
Sbjct: 302 gtcattacatattctggggcagcatagccgtatgtacccat 342
>emb|CR303489.1| mte1-22K2RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1219 ccgatcaacttcaccaaattt 1239
|||||||||||||||||||||
Sbjct: 64 ccgatcaacttcaccaaattt 44
>emb|CR308459.1| mte1-29P10FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 824
Score = 42.1 bits (21), Expect = 0.15
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 880 gtcatcacatattcaggggcagcataaccgtaggttcccat 920
||||| |||||||| ||||||||||| ||||| || |||||
Sbjct: 330 gtcattacatattctggggcagcatagccgtatgtacccat 370
>emb|CR313911.1| mte1-37O19RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 472
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1219 ccgatcaacttcaccaaattt 1239
|||||||||||||||||||||
Sbjct: 64 ccgatcaacttcaccaaattt 44
>gb|AW559998.1|AW559998 EST315046 DSIR Medicago truncatula cDNA clone pDSIR-26C3, mRNA
sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1204 tcttcgcagcaatatccgatcaacttcac 1232
||||| ||||||||||| |||||||||||
Sbjct: 529 tcttcacagcaatatccaatcaacttcac 501
>gb|AW559999.1|AW559999 EST315047 DSIR Medicago truncatula cDNA clone pDSIR-26C3, mRNA
sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1204 tcttcgcagcaatatccgatcaacttcac 1232
||||| ||||||||||| |||||||||||
Sbjct: 553 tcttcacagcaatatccaatcaacttcac 525
>gb|BG644907.1|BG644907 EST506526 KV3 Medicago truncatula cDNA clone pKV3-38P1 5' end, mRNA
sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1275 aagccattctctgtgcccttgatgtccat 1303
|||||||||| |||| |||||||||||||
Sbjct: 666 aagccattctttgtgaccttgatgtccat 638
>gb|AC138015.24| Medicago truncatula clone mth2-34m6, complete sequence
Length = 126845
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 106200 aaagcaaagcaaagcaaagca 106220
>gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-168l8, complete
sequence
Length = 145061
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1219 ccgatcaacttcaccaaattt 1239
|||||||||||||||||||||
Sbjct: 37250 ccgatcaacttcaccaaattt 37230
>gb|AC143337.22| Medicago truncatula clone mth2-35d19, WORKING DRAFT SEQUENCE
Length = 118138
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 19 aaagcaaagcaaagcaaagca 39
|||||||||||||||||||||
Sbjct: 28720 aaagcaaagcaaagcaaagca 28700
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 301,118
Number of Sequences: 392609
Number of extensions: 301118
Number of successful extensions: 26177
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26048
Number of HSP's gapped (non-prelim): 125
length of query: 1649
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1629
effective length of database: 433,880,813
effective search space: 706791844377
effective search space used: 706791844377
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)