BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437687.2.1
(1171 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG950829.1|CG950829 MBELR29TFB mth2 Medicago truncatula ... 40 0.41
gb|AW559985.1|AW559985 EST315033 DSIR Medicago truncatula c... 40 0.41
gb|CA919151.1|CA919151 EST636869 MTUS Medicago truncatula c... 40 0.41
gb|CF068480.1|CF068480 EST669201 MTUS Medicago truncatula c... 40 0.41
gb|DW015185.1|DW015185 EST1224146 MTY Medicago truncatula c... 40 0.41
>gb|CG950829.1|CG950829 MBELR29TFB mth2 Medicago truncatula genomic clone 82E10, DNA
sequence
Length = 885
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 701 ctggatggggaggaggaaat 720
||||||||||||||||||||
Sbjct: 777 ctggatggggaggaggaaat 796
>gb|AW559985.1|AW559985 EST315033 DSIR Medicago truncatula cDNA clone pDSIR-26A13, mRNA
sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 562 caacgttgctgattaggact 581
||||||||||||||||||||
Sbjct: 622 caacgttgctgattaggact 603
>gb|CA919151.1|CA919151 EST636869 MTUS Medicago truncatula cDNA clone MTUS-8E8, mRNA
sequence
Length = 744
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 562 caacgttgctgattaggact 581
||||||||||||||||||||
Sbjct: 383 caacgttgctgattaggact 402
>gb|CF068480.1|CF068480 EST669201 MTUS Medicago truncatula cDNA clone MTUS-8E8, mRNA
sequence
Length = 739
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 562 caacgttgctgattaggact 581
||||||||||||||||||||
Sbjct: 580 caacgttgctgattaggact 561
>gb|DW015185.1|DW015185 EST1224146 MTY Medicago truncatula cDNA clone MTYA208, mRNA
sequence
Length = 880
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 562 caacgttgctgattaggact 581
||||||||||||||||||||
Sbjct: 676 caacgttgctgattaggact 657
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 201,825
Number of Sequences: 392609
Number of extensions: 201825
Number of successful extensions: 13663
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13658
Number of HSP's gapped (non-prelim): 5
length of query: 1171
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1151
effective length of database: 433,880,813
effective search space: 499396815763
effective search space used: 499396815763
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)