BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE324374.2|BE324374 NF015G01PL1F1005 Phosphate starved l... 64 3e-008
gb|AC155101.19| Medicago truncatula clone mth2-139j13, comp... 62 1e-007
gb|CX528962.1|CX528962 s13dNF10H09MJ076_243984 Methyl Jasmo... 58 2e-006
gb|BF519079.1|BF519079 EST456539 DSIL Medicago truncatula c... 48 0.001
gb|BI308637.1|BI308637 EST530047 GPOD Medicago truncatula c... 48 0.001
gb|BQ154720.1|BQ154720 NF099G01IR1F1008 Irradiated Medicago... 48 0.001
gb|CA922013.1|CA922013 EST639731 MTUS Medicago truncatula c... 48 0.001
gb|CA990471.1|CA990471 EST643979 GESD Medicago truncatula c... 48 0.001
gb|CA990480.1|CA990480 EST643988 GESD Medicago truncatula c... 48 0.001
gb|CX523674.1|CX523674 s13dNF02F03AT029_322732 Aphid-Infect... 48 0.001
gb|AC137820.11| Medicago truncatula clone mth2-15f9, comple... 48 0.001
gb|BQ165647.1|BQ165647 EST611516 KVKC Medicago truncatula c... 46 0.006
emb|CR342660.1| mte1-75B7FM1 BAC end, cultivar Jemalong A17... 44 0.023
gb|BI311684.1|BI311684 EST5313434 GESD Medicago truncatula ... 44 0.023
gb|BF631862.1|BF631862 NF025F04DT1F1032 Drought Medicago tr... 42 0.093
gb|AC126013.12| Medicago truncatula clone mth2-32e10, compl... 42 0.093
gb|AC130811.22| Medicago truncatula clone mth2-26b4, comple... 42 0.093
gb|AC146807.49| Medicago truncatula clone mth2-154j21, WORK... 42 0.093
emb|CR967509.1| mth4-36M18FM1 BAC end, cultivar Jemalong A1... 40 0.37
gb|AC148655.4| Medicago truncatula clone mth2-61c11, comple... 40 0.37
gb|AC148446.2| Medicago truncatula chromosome 2 clone mth2-... 40 0.37
>gb|BE324374.2|BE324374 NF015G01PL1F1005 Phosphate starved leaf Medicago truncatula cDNA
clone NF015G01PL 5', mRNA sequence
Length = 346
Score = 63.9 bits (32), Expect = 3e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 10 attcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtcctt 69
||||| |||||||| ||||||||||||||||||||||||| || ||| | || ||||||
Sbjct: 177 attcgacatccacgtgttggtgaatatgcatttggattcattacctcatccgttgtcctt 236
Query: 70 caga 73
||||
Sbjct: 237 caga 240
>gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete sequence
Length = 124152
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 10 attcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtcctt 69
||||| |||||||| ||||||||||||||||||||||||| || ||| | || ||||||
Sbjct: 107051 attcgacatccacgtgttggtgaatatgcatttggattcattacctcatccgttgtcctt 106992
Query: 70 cag 72
|||
Sbjct: 106991 cag 106989
Score = 44.1 bits (22), Expect = 0.023
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttct 146
|||| ||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 113081 gtgtctatgttcccacaaaccatctttatatcggtgatatatttct 113036
Score = 42.1 bits (21), Expect = 0.093
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 10 attcgtcatccacgaattggtgaatatgcatttggattcat 50
||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 113431 attcgacatccacgtgtaggtgaatatgcattgggattcat 113391
>gb|CX528962.1|CX528962 s13dNF10H09MJ076_243984 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 611
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 10 attcgtcatccacgaattggtgaatatgcatttggattcat 50
||||| |||||||| |||||||||||||||||||||||||
Sbjct: 563 attcgacatccacgtgttggtgaatatgcatttggattcat 603
>gb|BF519079.1|BF519079 EST456539 DSIL Medicago truncatula cDNA clone pDSIL-19L9, mRNA
sequence
Length = 651
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
||||| || |||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 466 gcaattatccgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 521
>gb|BI308637.1|BI308637 EST530047 GPOD Medicago truncatula cDNA clone pGPOD-7O2 5' end,
mRNA sequence
Length = 760
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
||||| || |||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 661 gcaattatccgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 716
>gb|BQ154720.1|BQ154720 NF099G01IR1F1008 Irradiated Medicago truncatula cDNA clone
NF099G01IR 5', mRNA sequence
Length = 666
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
||||| || |||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 286 gcaattatccgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 341
>gb|CA922013.1|CA922013 EST639731 MTUS Medicago truncatula cDNA clone MTUS-47E10, mRNA
sequence
Length = 779
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
||||| || |||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 481 gcaattatccgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 426
>gb|CA990471.1|CA990471 EST643979 GESD Medicago truncatula cDNA clone GESD-28D22, mRNA
sequence
Length = 821
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
||||| || |||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 542 gcaattatccgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 597
>gb|CA990480.1|CA990480 EST643988 GESD Medicago truncatula cDNA clone GESD-28F22, mRNA
sequence
Length = 712
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
||||| || |||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 515 gcaattatccgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 570
>gb|CX523674.1|CX523674 s13dNF02F03AT029_322732 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 692
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
||||| || |||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 505 gcaattatccgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 450
>gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete sequence
Length = 134674
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
||||| || |||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 118878 gcaattatccgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 118823
>gb|BQ165647.1|BQ165647 EST611516 KVKC Medicago truncatula cDNA clone pKVKC-10G1, mRNA
sequence
Length = 798
Score = 46.1 bits (23), Expect = 0.006
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 13 cgtcatccacgaattggtgaatatgcatttggattcataacatcaac 59
|||||||| || ||||||||||||| ||||| ||||| ||||||||
Sbjct: 714 cgtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 760
>emb|CR342660.1| mte1-75B7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 654
Score = 44.1 bits (22), Expect = 0.023
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttct 146
|||| ||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 383 gtgtctatgttcccacaaaccatctttatatcggtgatatatttct 338
>gb|BI311684.1|BI311684 EST5313434 GESD Medicago truncatula cDNA clone pGESD13J1 5' end,
mRNA sequence
Length = 687
Score = 44.1 bits (22), Expect = 0.023
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatatatttct 146
|||| ||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 302 gtgtctatgttcccacaaaccatctttatatcggtgatatatttct 347
Score = 44.1 bits (22), Expect = 0.023
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 10 attcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtggtcctt 69
||||| |||||||| | |||||||||||||| |||||||| || || | || ||||||
Sbjct: 211 attcgacatccacgtgtaggtgaatatgcattgggattcatcacctcgtctgttgtcctt 270
Query: 70 cagact 75
||||||
Sbjct: 271 cagact 276
>gb|BF631862.1|BF631862 NF025F04DT1F1032 Drought Medicago truncatula cDNA clone NF025F04DT
5', mRNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.093
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 10 attcgtcatccacgaattggtgaatatgcatttggattcat 50
||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 571 attcgacatccacgtgtaggtgaatatgcattgggattcat 611
>gb|AC126013.12| Medicago truncatula clone mth2-32e10, complete sequence
Length = 116778
Score = 42.1 bits (21), Expect = 0.093
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 851 agactgaaataaaataaaata 871
|||||||||||||||||||||
Sbjct: 88850 agactgaaataaaataaaata 88830
>gb|AC130811.22| Medicago truncatula clone mth2-26b4, complete sequence
Length = 139970
Score = 42.1 bits (21), Expect = 0.093
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 851 agactgaaataaaataaaata 871
|||||||||||||||||||||
Sbjct: 93672 agactgaaataaaataaaata 93692
>gb|AC146807.49| Medicago truncatula clone mth2-154j21, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 132941
Score = 42.1 bits (21), Expect = 0.093
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 856 gaaataaaataaaatagatgg 876
|||||||||||||||||||||
Sbjct: 17028 gaaataaaataaaatagatgg 17048
>emb|CR967509.1| mth4-36M18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 856 gaaataaaataaaatagatg 875
||||||||||||||||||||
Sbjct: 428 gaaataaaataaaatagatg 409
>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence
Length = 89884
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 856 gaaataaaataaaatagatg 875
||||||||||||||||||||
Sbjct: 25024 gaaataaaataaaatagatg 25005
>gb|AC148446.2| Medicago truncatula chromosome 2 clone mth2-58i9, *** SEQUENCING IN
PROGRESS ***, 11 unordered pieces
Length = 127336
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 856 gaaataaaataaaatagatg 875
||||||||||||||||||||
Sbjct: 14917 gaaataaaataaaatagatg 14936
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 496,788
Number of Sequences: 392609
Number of extensions: 496788
Number of successful extensions: 55292
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55096
Number of HSP's gapped (non-prelim): 196
length of query: 1041
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1021
effective length of database: 433,880,813
effective search space: 442992310073
effective search space used: 442992310073
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)