BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG936601.1|CG936601 MBEEI37TFB mth2 Medicago truncatula ... 58 8e-007
gb|CG939602.1|CG939602 MBELA01TF mth2 Medicago truncatula g... 58 8e-007
gb|AL377152.1|AL377152 MtBB29F12F1 MtBB Medicago truncatula... 58 8e-007
>gb|CG936601.1|CG936601 MBEEI37TFB mth2 Medicago truncatula genomic clone 38G1, DNA
sequence
Length = 786
Score = 58.0 bits (29), Expect = 8e-007
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 163 agtcattcatgccaaaccatgccttcatcggagcatagttcaactcatcagtcactaagt 222
||||||||||| ||||||| |||||||||| |||||| || | |||||||| || | ||
Sbjct: 581 agtcattcatggcaaaccacgccttcatcgaagcataatttatttcatcagtgacaaggt 522
Query: 223 gaaaaacaa 231
|||||||||
Sbjct: 521 gaaaaacaa 513
>gb|CG939602.1|CG939602 MBELA01TF mth2 Medicago truncatula genomic clone 78A1, DNA sequence
Length = 914
Score = 58.0 bits (29), Expect = 8e-007
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 163 agtcattcatgccaaaccatgccttcatcggagcatagttcaactcatcagtcactaagt 222
||||||||||| ||||||| |||||||||| |||||| || | |||||||| || | ||
Sbjct: 271 agtcattcatggcaaaccacgccttcatcgaagcataatttatttcatcagtgacaaggt 212
Query: 223 gaaaaacaa 231
|||||||||
Sbjct: 211 gaaaaacaa 203
>gb|AL377152.1|AL377152 MtBB29F12F1 MtBB Medicago truncatula cDNA clone MtBB29F12 T3, mRNA
sequence
Length = 427
Score = 58.0 bits (29), Expect = 8e-007
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 163 agtcattcatgccaaaccatgccttcatcggagcatagttcaactcatcagtcactaagt 222
||||||||||| ||||||| |||||||||| |||||| || | |||||||| || | ||
Sbjct: 213 agtcattcatggcaaaccacgccttcatcgaagcataatttatttcatcagtgacaaggt 154
Query: 223 gaaaaacaa 231
|||||||||
Sbjct: 153 gaaaaacaa 145
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,882
Number of Sequences: 392609
Number of extensions: 98882
Number of successful extensions: 7727
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7724
Number of HSP's gapped (non-prelim): 3
length of query: 515
length of database: 441,732,993
effective HSP length: 19
effective length of query: 496
effective length of database: 434,273,422
effective search space: 215399617312
effective search space used: 215399617312
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)