BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430806.2.1
(1380 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX531473.1|CX531473 s13dNF34F11MJ092_256896 Methyl Jasmo... 103 4e-020
gb|DW017190.1|DW017190 EST1226151 MTY Medicago truncatula c... 103 4e-020
gb|CX533594.1|CX533594 s13dNF0HC12MJ086_320341 Methyl Jasmo... 94 4e-017
gb|CX525050.1|CX525050 s13dNF19H10AT092_478734 Aphid-Infect... 78 2e-012
gb|BQ151725.1|BQ151725 NF023A01IR1F1005 Irradiated Medicago... 66 9e-009
gb|BI265399.1|BI265399 NF082A02IN1F1017 Insect herbivory Me... 42 0.12
gb|CA858622.1|CA858622 EST635877 GLSD Medicago truncatula c... 42 0.12
gb|AC124952.15| Medicago truncatula clone mth2-24m24, compl... 42 0.12
gb|AC131239.20| Medicago truncatula clone mth2-18o15, compl... 42 0.12
gb|AC157538.18| Medicago truncatula clone mth2-150a17, WORK... 42 0.12
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 40 0.49
>gb|CX531473.1|CX531473 s13dNF34F11MJ092_256896 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 661
Score = 103 bits (52), Expect = 4e-020
Identities = 199/248 (80%)
Strand = Plus / Plus
Query: 566 tggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgtttt 625
|||||||| ||||||||||| |||| || ||||| |||| || || | || ||||||
Sbjct: 411 tggatgcctagaggtgatgccttgaaaaaacttgaagaaagaggagtggtcatacgtttt 470
Query: 626 gttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaat 685
|| |||||||||||| | |||||||||||||||||||| || |||||| |||| |||||
Sbjct: 471 gtaattggtcggagtcctaatcgaggtgatagcttggatcgcaatattaatgaggaaaac 530
Query: 686 cggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcagaagaattaccg 745
|| ||||| || |||||||||||||||||||| || || ||| |||||| || ||
Sbjct: 531 cgctcaacaaaagatttcttgattcttgaaagtcacgaggaagctcaagaagagttgcct 590
Query: 746 agcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcagaattttatgtc 805
| ||||||||||| ||||| ||| | || ||| | ||||||||| || ||||||||
Sbjct: 591 aaaaaagcaaaaatcttctttagtacggcggttcagaactgggatgctgatttttatgtg 650
Query: 806 aaagttga 813
||||||||
Sbjct: 651 aaagttga 658
>gb|DW017190.1|DW017190 EST1226151 MTY Medicago truncatula cDNA clone MTYAQ60, mRNA
sequence
Length = 780
Score = 103 bits (52), Expect = 4e-020
Identities = 199/248 (80%)
Strand = Plus / Plus
Query: 566 tggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgtttt 625
|||||||| ||||||||||| |||| || ||||| |||| || || | || ||||||
Sbjct: 511 tggatgcctagaggtgatgccttgaaaaaacttgaagaaagaggagtggtcatacgtttt 570
Query: 626 gttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaat 685
|| |||||||||||| | |||||||||||||||||||| || |||||| |||| |||||
Sbjct: 571 gtaattggtcggagtcctaatcgaggtgatagcttggatcgcaatattaatgaggaaaac 630
Query: 686 cggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcagaagaattaccg 745
|| ||||| || |||||||||||||||||||| || || ||| |||||| || ||
Sbjct: 631 cgctcaacaaaagatttcttgattcttgaaagtcacgaggaagctcaagaagagttgcct 690
Query: 746 agcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcagaattttatgtc 805
| ||||||||||| ||||| ||| | || ||| | ||||||||| || ||||||||
Sbjct: 691 aaaaaagcaaaaatcttctttagtacggcggttcagaactgggatgctgatttttatgtg 750
Query: 806 aaagttga 813
||||||||
Sbjct: 751 aaagttga 758
>gb|CX533594.1|CX533594 s13dNF0HC12MJ086_320341 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 572
Score = 93.7 bits (47), Expect = 4e-017
Identities = 128/155 (82%)
Strand = Plus / Plus
Query: 566 tggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgtttt 625
|||||||| ||||||||||| |||| || ||||| |||| || || | || ||||||
Sbjct: 417 tggatgcctagaggtgatgccttgaaaaaacttgaagaaagaggagtggtcatacgtttt 476
Query: 626 gttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaat 685
|| |||||||||||| | |||||||||||||||||||| || |||||| |||| |||||
Sbjct: 477 gtaattggtcggagtcctaatcgaggtgatagcttggatcgcaatattaatgaggaaaac 536
Query: 686 cggcagacaaaggacttcttgattcttgaaagtca 720
|| ||||| || ||||||||||||||||||||
Sbjct: 537 cgctcaacaaaagatttcttgattcttgaaagtca 571
>gb|CX525050.1|CX525050 s13dNF19H10AT092_478734 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 550
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 566 tggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgtttt 625
|||||||| ||||||||||| |||| || ||||| |||| || || | || ||||||
Sbjct: 420 tggatgcctagaggtgatgccttgaaaaaacttgaagaaagaggagtggtcatacgtttt 479
Query: 626 gttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaa 684
|| |||||||||||| | |||||||||||||||||||| || |||||| |||| |||||
Sbjct: 480 gtaattggtcggagtcctaatcgaggtgatagcttggatcgcaatattaatgaggaaaa 538
>gb|BQ151725.1|BQ151725 NF023A01IR1F1005 Irradiated Medicago truncatula cDNA clone
NF023A01IR 5', mRNA sequence
Length = 585
Score = 65.9 bits (33), Expect = 9e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 935 tggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgcttct 994
|||||||||||||| |||||||||||||| ||| |||| ||||||| ||||| || |||
Sbjct: 18 tggtatgaacctgattggtggaaatttggggatgaaaaatcgtatttccgacatgcatct 77
Query: 995 ggttc 999
|||||
Sbjct: 78 ggttc 82
>gb|BI265399.1|BI265399 NF082A02IN1F1017 Insect herbivory Medicago truncatula cDNA clone
NF082A02IN 5', mRNA sequence
Length = 535
Score = 42.1 bits (21), Expect = 0.12
Identities = 50/57 (87%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 629 attggtcggagtgcaaatcga-ggtgatagcttggaccgtaatattgatgatgaaaa 684
|||||||||||| | |||||| |||||||||||||| || |||||| |||| |||||
Sbjct: 479 attggtcggagtcctaatcgagggtgatagcttggatcg-aatattaatgaggaaaa 534
>gb|CA858622.1|CA858622 EST635877 GLSD Medicago truncatula cDNA clone pGLSD-38D15, mRNA
sequence
Length = 874
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
|||||||| || |||||||||||||||||
Sbjct: 143 tgggatgctgatttttatgtcaaagttga 171
>gb|AC124952.15| Medicago truncatula clone mth2-24m24, complete sequence
Length = 134356
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 577 aggtgatgctctgaagaagct 597
|||||||||||||||||||||
Sbjct: 5464 aggtgatgctctgaagaagct 5444
>gb|AC131239.20| Medicago truncatula clone mth2-18o15, complete sequence
Length = 140751
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagct 597
|||||||||||||||||||||
Sbjct: 72647 aggtgatgctctgaagaagct 72667
>gb|AC157538.18| Medicago truncatula clone mth2-150a17, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 102509
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagct 597
|||||||||||||||||||||
Sbjct: 65753 aggtgatgctctgaagaagct 65773
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 773 gcagttgaagcctgggatgcagaa 796
|||| |||||||||||||||||||
Sbjct: 13947 gcagatgaagcctgggatgcagaa 13924
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 330,691
Number of Sequences: 392609
Number of extensions: 330691
Number of successful extensions: 22989
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22946
Number of HSP's gapped (non-prelim): 36
length of query: 1380
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1360
effective length of database: 433,880,813
effective search space: 590077905680
effective search space used: 590077905680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)