BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405118.2.1
(1669 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE123932.1|BE123932 EST394057 DSIL Medicago truncatula c... 56 1e-005
gb|BF635808.1|BF635808 NF029F08DT1F1064 Drought Medicago tr... 56 1e-005
gb|BF644979.1|BF644979 NF019G06EC1F1051 Elicited cell cultu... 56 1e-005
gb|BF646508.1|BF646508 NF076A02EC1F1008 Elicited cell cultu... 56 1e-005
gb|BF650841.1|BF650841 NF101F08EC1F1073 Elicited cell cultu... 56 1e-005
gb|AW692803.2|AW692803 NF059G11ST1F1087 Developing stem Med... 56 1e-005
gb|BG645600.1|BG645600 EST507219 KV3 Medicago truncatula cD... 56 1e-005
gb|BI262784.1|BI262784 NF094A03EC1F1021 Elicited cell cultu... 56 1e-005
gb|BI308959.1|BI308959 EST530369 GPOD Medicago truncatula c... 56 1e-005
gb|BI309629.1|BI309629 EST531039 GPOD Medicago truncatula c... 56 1e-005
gb|BQ136060.1|BQ136060 NF032E09EC1F1070 Elicited cell cultu... 56 1e-005
gb|BQ139249.1|BQ139249 NF013B06PH1F1046 Phoma-infected Medi... 56 1e-005
gb|BQ165412.1|BQ165412 EST611293 KVKC Medicago truncatula c... 56 1e-005
gb|CA917624.1|CA917624 EST641771 GPOD Medicago truncatula c... 56 1e-005
gb|CA917790.1|CA917790 EST641937 GPOD Medicago truncatula c... 56 1e-005
gb|CX524182.1|CX524182 s13dNF06H02AT016_447708 Aphid-Infect... 56 1e-005
gb|DW017352.1|DW017352 EST1226313 MTY Medicago truncatula c... 56 1e-005
gb|DW017609.1|DW017609 EST1226570 MTY Medicago truncatula c... 56 1e-005
gb|AL372163.1|AL372163 MtBA49A08F1 MtBA Medicago truncatula... 52 2e-004
gb|AL372413.1|AL372413 MtBA50F11F1 MtBA Medicago truncatula... 50 6e-004
gb|BF633733.1|BF633733 NF055E01DT1F1004 Drought Medicago tr... 46 0.010
>gb|BE123932.1|BE123932 EST394057 DSIL Medicago truncatula cDNA clone pDSIL-11N21, mRNA
sequence
Length = 628
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 420 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 369
>gb|BF635808.1|BF635808 NF029F08DT1F1064 Drought Medicago truncatula cDNA clone NF029F08DT
5', mRNA sequence
Length = 485
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 435 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 384
>gb|BF644979.1|BF644979 NF019G06EC1F1051 Elicited cell culture Medicago truncatula cDNA clone
NF019G06EC 5', mRNA sequence
Length = 635
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 435 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 384
>gb|BF646508.1|BF646508 NF076A02EC1F1008 Elicited cell culture Medicago truncatula cDNA clone
NF076A02EC 5', mRNA sequence
Length = 561
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 435 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 384
>gb|BF650841.1|BF650841 NF101F08EC1F1073 Elicited cell culture Medicago truncatula cDNA clone
NF101F08EC 5', mRNA sequence
Length = 668
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 444 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 393
>gb|AW692803.2|AW692803 NF059G11ST1F1087 Developing stem Medicago truncatula cDNA clone
NF059G11ST 5', mRNA sequence
Length = 597
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 434 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 383
>gb|BG645600.1|BG645600 EST507219 KV3 Medicago truncatula cDNA clone pKV3-46D14 5' end, mRNA
sequence
Length = 833
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 409 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 358
>gb|BI262784.1|BI262784 NF094A03EC1F1021 Elicited cell culture Medicago truncatula cDNA clone
NF094A03EC 5', mRNA sequence
Length = 543
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 399 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 348
>gb|BI308959.1|BI308959 EST530369 GPOD Medicago truncatula cDNA clone pGPOD-10C6 5' end, mRNA
sequence
Length = 623
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 408 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 357
>gb|BI309629.1|BI309629 EST531039 GPOD Medicago truncatula cDNA clone pGPOD-13L21 5' end,
mRNA sequence
Length = 545
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 384 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 333
>gb|BQ136060.1|BQ136060 NF032E09EC1F1070 Elicited cell culture Medicago truncatula cDNA clone
NF032E09EC 5', mRNA sequence
Length = 658
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 429 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 378
>gb|BQ139249.1|BQ139249 NF013B06PH1F1046 Phoma-infected Medicago truncatula cDNA clone
NF013B06PH 5', mRNA sequence
Length = 666
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 434 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 383
>gb|BQ165412.1|BQ165412 EST611293 KVKC Medicago truncatula cDNA clone pKVKC-9B2, mRNA
sequence
Length = 794
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 65 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 14
>gb|CA917624.1|CA917624 EST641771 GPOD Medicago truncatula cDNA clone GPOD-36D10, mRNA
sequence
Length = 652
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 391 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 340
>gb|CA917790.1|CA917790 EST641937 GPOD Medicago truncatula cDNA clone GPOD-37C18, mRNA
sequence
Length = 747
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 410 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 359
>gb|CX524182.1|CX524182 s13dNF06H02AT016_447708 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 455
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 441 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 390
>gb|DW017352.1|DW017352 EST1226313 MTY Medicago truncatula cDNA clone MTYAS56, mRNA sequence
Length = 859
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 465 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 414
>gb|DW017609.1|DW017609 EST1226570 MTY Medicago truncatula cDNA clone MTYAV76, mRNA sequence
Length = 733
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1163 tcagtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 465 tcagtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 414
>gb|AL372163.1|AL372163 MtBA49A08F1 MtBA Medicago truncatula cDNA clone MtBA49A08 T3, mRNA
sequence
Length = 425
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1165 agtgtagacgtcgttgtatgaccagatcttcttgttgcagtactgctcaa 1214
|||||| || || ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 425 agtgtaaacatcattgtaagaccagatcttcttgttacagtattgctcaa 376
>gb|AL372413.1|AL372413 MtBA50F11F1 MtBA Medicago truncatula cDNA clone MtBA50F11 T3, mRNA
sequence
Length = 411
Score = 50.1 bits (25), Expect = 6e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1178 ttgtatgaccagatcttcttgttgcagtactgctcaa 1214
||||| ||||||||||||||||| ||||| |||||||
Sbjct: 409 ttgtaagaccagatcttcttgttacagtattgctcaa 373
>gb|BF633733.1|BF633733 NF055E01DT1F1004 Drought Medicago truncatula cDNA clone NF055E01DT
5', mRNA sequence
Length = 425
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1184 gaccagatcttcttgttgcagtactgctcaa 1214
||||||||||||||||| ||||| |||||||
Sbjct: 413 gaccagatcttcttgttacagtattgctcaa 383
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 202,774
Number of Sequences: 392609
Number of extensions: 202774
Number of successful extensions: 15943
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15902
Number of HSP's gapped (non-prelim): 41
length of query: 1669
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1649
effective length of database: 433,880,813
effective search space: 715469460637
effective search space used: 715469460637
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)